ATAC-seq snakemake pipeline
☆90Feb 13, 2020Updated 6 years ago
Alternatives and similar repositories for pyflow-ATACseq
Users that are interested in pyflow-ATACseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A toolkit for QC and visualization of ATAC-seq results.☆75Jan 8, 2025Updated last year
- Differential ATAC-seq toolkit☆29Dec 21, 2023Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Dec 8, 2021Updated 4 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆17Nov 20, 2018Updated 7 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆133Jan 1, 2026Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ENCODE ATAC-seq pipeline☆450Jul 18, 2024Updated last year
- ChIP-seq analysis notes from Ming Tang☆850Aug 5, 2024Updated last year
- Collection of R functions used in the Hochwagen Lab☆12Aug 4, 2025Updated 9 months ago
- ☆145Jan 7, 2019Updated 7 years ago
- nucleosome calling using ATAC-seq☆111Dec 20, 2020Updated 5 years ago
- ATAC-seq and DNase-seq processing pipeline☆166Jun 21, 2022Updated 3 years ago
- snakemake workflow for post-processing scATACseq data☆23Jul 15, 2020Updated 5 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆82Mar 16, 2026Updated 2 months ago
- ☆17Sep 28, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- RNAseq pipeline based on snakemake☆27Mar 8, 2023Updated 3 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Dec 3, 2018Updated 7 years ago
- HiCorr: a Hi-C data bias-correction pipeline☆31Apr 1, 2025Updated last year
- Harvard FAS informatics scRNAseq workshop website☆39Aug 8, 2019Updated 6 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Apr 25, 2019Updated 7 years ago
- RNAseq analysis notes from Ming Tang☆1,086Nov 15, 2021Updated 4 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26May 21, 2018Updated 8 years ago
- IDR☆176Sep 18, 2018Updated 7 years ago
- Analysis pipeline for ATAC-seq Data☆63Sep 2, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Analyzing chromatin accessibility data in R☆19Jun 23, 2023Updated 2 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆48Mar 26, 2025Updated last year
- Detecting sites of genomic enrichment☆201May 8, 2023Updated 3 years ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆405May 18, 2026Updated last week
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆247Mar 23, 2026Updated 2 months ago
- IDR☆30Mar 30, 2023Updated 3 years ago
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Aug 24, 2017Updated 8 years ago
- A toolkit for working with ATAC-seq data.☆24Jan 22, 2026Updated 4 months ago
- cluster stability measurement by subsampling and reclustering with Seurat V3 and V4☆11Jul 9, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Primer design for ATAC-qPCR☆13Jan 11, 2022Updated 4 years ago
- Jupyter notebook based genomic data visualization toolkit.☆257Dec 4, 2025Updated 5 months ago
- Useful bash one-liners for bioinformatics.☆10Jun 26, 2017Updated 8 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Nov 16, 2022Updated 3 years ago
- R/Bioconductor package for working with 10x scATACseq data☆42Nov 13, 2023Updated 2 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆76Aug 3, 2023Updated 2 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆38Aug 4, 2022Updated 3 years ago