databio / pepatacLinks
A modular, containerized pipeline for ATAC-seq data processing
☆59Updated last week
Alternatives and similar repositories for pepatac
Users that are interested in pepatac are comparing it to the libraries listed below
Sorting:
- HMMRATAC peak caller for ATAC-seq data☆99Updated 10 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 8 months ago
- Tutorial Website☆59Updated 4 years ago
- Links to ATAC-seq analysis tools☆70Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 8 months ago
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- An R package to time somatic mutations☆64Updated 4 years ago
- RNA editing tests☆17Updated 5 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated 2 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆71Updated 2 weeks ago
- ☆88Updated 4 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆23Updated 3 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- Estimate locus specific human LINE-1 expression.☆39Updated 3 weeks ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆37Updated last year
- SNV calling from single cell sequencing☆109Updated 10 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆78Updated 6 months ago
- nucleosome calling using ATAC-seq☆107Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 6 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆52Updated last year
- ☆88Updated 2 months ago
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆47Updated 2 months ago