ChIP-seq analysis notes from Ming Tang
☆851Aug 5, 2024Updated last year
Alternatives and similar repositories for ChIP-seq-analysis
Users that are interested in ChIP-seq-analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNAseq analysis notes from Ming Tang☆1,082Nov 15, 2021Updated 4 years ago
- MACS -- Model-based Analysis of ChIP-Seq☆774Apr 8, 2026Updated 3 weeks ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆132Jan 1, 2026Updated 4 months ago
- Intro to ChIPseq using HPC☆323Jan 30, 2023Updated 3 years ago
- my notes for scATACseq analysis☆133Apr 24, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- scRNAseq analysis notes from Ming Tang☆802Dec 2, 2024Updated last year
- Quick mining and visualization of NGS data by integrating genomic databases☆272May 5, 2023Updated 2 years ago
- DNA sequencing analysis notes from Ming Tang☆148Mar 26, 2023Updated 3 years ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,718Apr 13, 2026Updated 2 weeks ago
- ENCODE ATAC-seq pipeline☆449Jul 18, 2024Updated last year
- Unix, R and python tools for genomics and data science☆1,381Aug 25, 2025Updated 8 months ago
- ATAC-seq snakemake pipeline☆90Feb 13, 2020Updated 6 years ago
- ChIP peak Annotation, Comparison and Visualization☆253Nov 4, 2025Updated 5 months ago
- Tools to process and analyze deep sequencing data.☆759Jul 23, 2025Updated 9 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ENCODE ChIP-seq pipeline☆278Feb 15, 2024Updated 2 years ago
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,422May 31, 2023Updated 2 years ago
- ☆446Jun 15, 2020Updated 5 years ago
- Application for making ENCODE Blacklists☆337Apr 23, 2021Updated 5 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆878Jul 10, 2024Updated last year
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆237Apr 8, 2026Updated 3 weeks ago
- ENCODE Uniform processing pipeline for ChIP-seq☆124Mar 23, 2020Updated 6 years ago
- Detecting sites of genomic enrichment☆201May 8, 2023Updated 2 years ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆201Jan 30, 2026Updated 3 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆246Mar 23, 2026Updated last month
- ☆145Jan 7, 2019Updated 7 years ago
- A collection of tools for Hi-C data analysis☆640Mar 22, 2026Updated last month
- IDR☆176Sep 18, 2018Updated 7 years ago
- AQUAS TF and histone ChIP-seq pipeline☆112Jun 21, 2022Updated 3 years ago
- Bioinformatics one liners from Ming Tang☆500Oct 4, 2020Updated 5 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Jul 6, 2021Updated 4 years ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆434Mar 28, 2024Updated 2 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆322Apr 27, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- HMMRATAC peak caller for ATAC-seq data☆100Nov 12, 2024Updated last year
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆271Jul 17, 2025Updated 9 months ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆114Nov 3, 2025Updated 5 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Jul 20, 2020Updated 5 years ago
- ATAC-seq and DNase-seq processing pipeline☆165Jun 21, 2022Updated 3 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Dec 3, 2018Updated 7 years ago
- Analysis of single cell RNA-seq data course☆679Apr 11, 2022Updated 4 years ago