ChIP-seq analysis notes from Ming Tang
☆855Aug 5, 2024Updated 2 years ago
Alternatives and similar repositories for ChIP-seq-analysis
Users that are interested in ChIP-seq-analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNAseq analysis notes from Ming Tang☆1,097Nov 15, 2021Updated 4 years ago
- MACS -- Model-based Analysis of ChIP-Seq☆784Updated this week
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆133Jan 1, 2026Updated 8 months ago
- Intro to ChIPseq using HPC☆324Jan 30, 2023Updated 3 years ago
- my notes for scATACseq analysis☆135Apr 24, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Quick mining and visualization of NGS data by integrating genomic databases☆273May 5, 2023Updated 3 years ago
- scRNAseq analysis notes from Ming Tang☆840Dec 2, 2024Updated last year
- ENCODE ATAC-seq pipeline☆458Jul 18, 2024Updated 2 years ago
- DNA sequencing analysis notes from Ming Tang☆150Mar 26, 2023Updated 3 years ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,857Sep 7, 2026Updated 2 weeks ago
- Unix, R and python tools for genomics and data science☆1,409Aug 25, 2025Updated last year
- ATAC-seq snakemake pipeline☆91Feb 13, 2020Updated 6 years ago
- ChIP peak Annotation, Comparison and Visualization☆259Updated this week
- Tools to process and analyze deep sequencing data.☆765Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ENCODE ChIP-seq pipeline☆282Feb 15, 2024Updated 2 years ago
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,436May 31, 2023Updated 3 years ago
- ☆448Jun 15, 2020Updated 6 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆901Sep 10, 2026Updated last week
- ENCODE Uniform processing pipeline for ChIP-seq☆126Mar 23, 2020Updated 6 years ago
- Application for making ENCODE Blacklists☆348Apr 23, 2021Updated 5 years ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆246Sep 11, 2026Updated last week
- Detecting sites of genomic enrichment☆204Sep 6, 2026Updated 2 weeks ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆256Aug 3, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆202Jan 30, 2026Updated 7 months ago
- ☆150Jan 7, 2019Updated 7 years ago
- IDR☆180Sep 18, 2018Updated 8 years ago
- A collection of tools for Hi-C data analysis☆653Updated this week
- Bioinformatics one liners from Ming Tang☆504Oct 4, 2020Updated 5 years ago
- AQUAS TF and histone ChIP-seq pipeline☆112Jun 21, 2022Updated 4 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆44Jul 6, 2021Updated 5 years ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆444Mar 28, 2024Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆101Nov 12, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆113Nov 3, 2025Updated 10 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆321Apr 27, 2023Updated 3 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆277Jul 17, 2025Updated last year
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Jul 20, 2020Updated 6 years ago
- ATAC-seq and DNase-seq processing pipeline☆166Jun 21, 2022Updated 4 years ago
- Tutorial for AMSI BioInfoSummer 2018☆30Dec 3, 2018Updated 7 years ago
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆86Aug 25, 2020Updated 6 years ago