Alternatives and similar repositories for ChIP-seq-analysis

Users that are interested in ChIP-seq-analysis are comparing it to the libraries listed below

• crazyhottommy / RNA-seq-analysis
  RNAseq analysis notes from Ming Tang
  ☆1,068Updated 4 years ago
• macs3-project / MACS
  MACS -- Model-based Analysis of ChIP-Seq
  ☆767Updated 2 months ago
• hbctraining / DGE_workshop
  ☆405Updated 4 years ago
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆450Updated 8 years ago
• hemberg-lab / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆679Updated 3 years ago
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆443Updated 5 years ago
• hbctraining / Intro-to-scRNAseq
  ☆645Updated 2 weeks ago
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆444Updated last year
• nf-core / rnaseq
  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
  ☆1,186Updated last week
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆490Updated 8 months ago
• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆752Updated 6 months ago
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆321Updated 3 years ago
• hbctraining / scRNA-seq
  ☆601Updated 4 years ago
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆500Updated 5 years ago
• griffithlab / rnaseq_tutorial
  Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…
  ☆1,413Updated 2 years ago
• broadinstitute / infercnv
  Inferring CNV from Single-Cell RNA-Seq
  ☆650Updated 2 months ago
• CGATOxford / UMI-tools
  Tools for handling Unique Molecular Identifiers in NGS data sets
  ☆535Updated last week
• mdozmorov / HiC_tools
  A collection of tools for Hi-C data analysis
  ☆630Updated 2 months ago
• thelovelab / DESeq2
  Differential expression of RNA-seq data using the Negative Binomial
  ☆441Updated last month
• FelixKrueger / TrimGalore
  A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…
  ☆536Updated last week
• jmzeng1314 / NGS-pipeline
  By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline
  ☆331Updated 7 years ago
• mikelove / awesome-multi-omics
  List of software packages for multi-omics analysis
  ☆888Updated 3 weeks ago
• pachterlab / kallisto
  Near-optimal RNA-Seq quantification
  ☆715Updated last week
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆862Updated last year
• 10XGenomics / cellranger
  10x Genomics Single Cell Analysis
  ☆441Updated last month
• crazyhottommy / scRNAseq-analysis-notes
  scRNAseq analysis notes from Ming Tang
  ☆772Updated last year
• mdozmorov / scRNA-seq_notes
  A list of scRNA-seq analysis tools
  ☆772Updated 3 weeks ago
• MareesAT / GWA_tutorial
  A comprehensive tutorial about GWAS and PRS
  ☆963Updated 2 years ago
• MultiQC / MultiQC
  Aggregate results from bioinformatics analyses across many samples into a single report.
  ☆1,412Updated 2 weeks ago
• deweylab / RSEM
  RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
  ☆459Updated last year