ChIP-seq analysis notes from Ming Tang
☆842Aug 5, 2024Updated last year
Alternatives and similar repositories for ChIP-seq-analysis
Users that are interested in ChIP-seq-analysis are comparing it to the libraries listed below
Sorting:
- RNAseq analysis notes from Ming Tang☆1,069Nov 15, 2021Updated 4 years ago
- MACS -- Model-based Analysis of ChIP-Seq☆767Updated this week
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆131Jan 1, 2026Updated 2 months ago
- Quick mining and visualization of NGS data by integrating genomic databases☆268May 5, 2023Updated 2 years ago
- my notes for scATACseq analysis☆133Apr 24, 2024Updated last year
- Intro to ChIPseq using HPC☆319Jan 30, 2023Updated 3 years ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,659Feb 15, 2026Updated 2 weeks ago
- DNA sequencing analysis notes from Ming Tang☆149Mar 26, 2023Updated 2 years ago
- scRNAseq analysis notes from Ming Tang☆785Dec 2, 2024Updated last year
- ENCODE ATAC-seq pipeline☆446Jul 18, 2024Updated last year
- Unix, R and python tools for genomics and data science☆1,371Aug 25, 2025Updated 6 months ago
- Tools to process and analyze deep sequencing data.☆751Jul 23, 2025Updated 7 months ago
- ChIP peak Annotation, Comparison and Visualization☆250Nov 4, 2025Updated 3 months ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆199Jan 30, 2026Updated last month
- ATAC-seq snakemake pipeline☆88Feb 13, 2020Updated 6 years ago
- ENCODE ChIP-seq pipeline☆277Feb 15, 2024Updated 2 years ago
- Detecting sites of genomic enrichment☆199May 8, 2023Updated 2 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆864Jul 10, 2024Updated last year
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,416May 31, 2023Updated 2 years ago
- Application for making ENCODE Blacklists☆334Apr 23, 2021Updated 4 years ago
- A collection of tools for Hi-C data analysis☆631Jan 31, 2026Updated last month
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆232Nov 21, 2025Updated 3 months ago
- ENCODE Uniform processing pipeline for ChIP-seq☆124Mar 23, 2020Updated 5 years ago
- IDR☆175Sep 18, 2018Updated 7 years ago
- ☆445Jun 15, 2020Updated 5 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆240Dec 2, 2025Updated 3 months ago
- AQUAS TF and histone ChIP-seq pipeline☆112Jun 21, 2022Updated 3 years ago
- Bioinformatics one liners from Ming Tang☆501Oct 4, 2020Updated 5 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆321Apr 27, 2023Updated 2 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆268Jul 17, 2025Updated 7 months ago
- chromatin Variability Across Regions (of the genome!)☆185Jul 10, 2024Updated last year
- Analysis of single cell RNA-seq data course☆679Apr 11, 2022Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Jul 6, 2021Updated 4 years ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆431Mar 28, 2024Updated last year
- ☆145Jan 7, 2019Updated 7 years ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆399Jan 23, 2026Updated last month
- HMMRATAC peak caller for ATAC-seq data☆97Nov 12, 2024Updated last year
- A universal enrichment tool for interpreting omics data☆1,173Updated this week
- nucleosome calling using ATAC-seq☆110Dec 20, 2020Updated 5 years ago