hbctraining / Intro-to-ChIPseq
Intro to ChIPseq using HPC
☆288Updated last year
Related projects ⓘ
Alternatives and complementary repositories for Intro-to-ChIPseq
- Collections of library structure and sequence of popular single cell genomic methods☆435Updated last week
- ENCODE ATAC-seq pipeline☆389Updated 4 months ago
- ☆374Updated 2 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆306Updated last year
- Application for making ENCODE Blacklists☆273Updated 3 years ago
- ☆178Updated 3 weeks ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆197Updated 4 months ago
- RNA-seq workflow using STAR and DESeq2☆327Updated 3 months ago
- This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster☆166Updated 3 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆188Updated last month
- Analysis of single cell RNA-seq data course☆124Updated 2 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆259Updated last year
- GTEx & TOPMed data production and analysis pipelines☆342Updated 7 months ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆386Updated 7 months ago
- parallel fastq-dump wrapper☆283Updated last year
- Single cell RNA sequencing analysis course☆195Updated last month
- TCR and BCR assembly from RNA-seq data☆282Updated last week
- Single-cell Transcriptome and Regulome Analysis Pipeline☆279Updated last year
- ☆239Updated last week
- This Snakemake pipeline implements the GATK best-practices workflow☆243Updated last year
- ENCODE ChIP-seq pipeline☆246Updated 9 months ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆194Updated last month
- Customizable workflows based on snakemake and python for the analysis of NGS data☆388Updated this week
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆275Updated 4 months ago
- Table of software for the analysis of single-cell RNA-seq data.☆308Updated this week
- my notes for scATACseq analysis☆118Updated 6 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆246Updated last month
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆392Updated last week
- 10x Genomics Single Cell Analysis☆366Updated 2 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆415Updated 6 months ago