Alternatives and similar repositories for Intro-to-ChIPseq:

Users that are interested in Intro-to-ChIPseq are comparing it to the libraries listed below

• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆457Updated 4 months ago
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆411Updated 8 months ago
• hbctraining / Intro-to-DGE
  ☆192Updated 3 weeks ago
• hbctraining / DGE_workshop
  ☆389Updated 3 years ago
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆296Updated 3 years ago
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆338Updated 8 months ago
• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆167Updated 4 years ago
• nf-core / atacseq
  ATAC-seq peak-calling and QC analysis pipeline
  ☆200Updated last month
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆134Updated 2 years ago
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆362Updated 2 months ago
• loosolab / TOBIAS
  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
  ☆210Updated 2 months ago
• ENCODE-DCC / chip-seq-pipeline2
  ENCODE ChIP-seq pipeline
  ☆264Updated last year
• shenlab-sinai / ngsplot
  Quick mining and visualization of NGS data by integrating genomic databases
  ☆264Updated last year
• scRNA-tools / scRNA-tools
  Table of software for the analysis of single-cell RNA-seq data.
  ☆317Updated this week
• r3fang / SnapATAC
  Analysis Pipeline for Single Cell ATAC-seq
  ☆317Updated last year
• nservant / HiC-Pro
  HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
  ☆400Updated last year
• mdozmorov / HiC_data
  A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.
  ☆189Updated 2 months ago
• sdparekh / zUMIs
  zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
  ☆278Updated 9 months ago
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆396Updated this week
• rvalieris / parallel-fastq-dump
  parallel fastq-dump wrapper
  ☆290Updated last year
• 10XGenomics / cellranger
  10x Genomics Single Cell Analysis
  ☆394Updated 2 months ago
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆441Updated 4 years ago
• mhammell-laboratory / TEtranscripts
  A package for including transposable elements in differential enrichment analysis of sequencing datasets.
  ☆246Updated 2 months ago
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆428Updated 8 years ago
• hbctraining / Investigating-chromatin-biology-ChIPseq
  ☆89Updated this week
• Cloufield / GWASTutorial
  GWAS Tutorial for Beginners
  ☆252Updated 3 months ago
• liulab-dfci / MAESTRO
  Single-cell Transcriptome and Regulome Analysis Pipeline
  ☆279Updated 2 years ago
• broadinstitute / infercnv
  Inferring CNV from Single-Cell RNA-Seq
  ☆605Updated 2 months ago
• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆208Updated last week
• nf-core / chipseq
  ChIP-seq peak-calling, QC and differential analysis pipeline.
  ☆211Updated last month