Alternatives and similar repositories for Intro-to-ChIPseq

Users that are interested in Intro-to-ChIPseq are comparing it to the libraries listed below

• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆472Updated 2 months ago
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆425Updated last year
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆313Updated 4 years ago
• hbctraining / DGE_workshop
  ☆392Updated 3 years ago
• ENCODE-DCC / chip-seq-pipeline2
  ENCODE ChIP-seq pipeline
  ☆271Updated last year
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆376Updated 2 months ago
• sdparekh / zUMIs
  zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
  ☆281Updated last year
• hbctraining / Intro-to-DGE
  ☆205Updated 4 months ago
• nf-core / atacseq
  ATAC-seq peak-calling and QC analysis pipeline
  ☆207Updated 3 weeks ago
• nservant / HiC-Pro
  HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
  ☆414Updated last year
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆343Updated last year
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆443Updated 5 years ago
• loosolab / TOBIAS
  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
  ☆217Updated last month
• shenlab-sinai / ngsplot
  Quick mining and visualization of NGS data by integrating genomic databases
  ☆267Updated 2 years ago
• r3fang / SnapATAC
  Analysis Pipeline for Single Cell ATAC-seq
  ☆318Updated 2 years ago
• Cloufield / GWASTutorial
  GWAS Tutorial for Beginners
  ☆303Updated 2 months ago
• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆169Updated 4 years ago
• FelixKrueger / Bismark
  A tool to map bisulfite converted sequence reads and determine cytosine methylation states
  ☆427Updated 3 months ago
• GreenleafLab / ArchR
  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
  ☆424Updated 5 months ago
• liulab-dfci / TRUST4
  TCR and BCR assembly from RNA-seq data
  ☆320Updated 3 weeks ago
• CGATOxford / UMI-tools
  Tools for handling Unique Molecular Identifiers in NGS data sets
  ☆515Updated 3 weeks ago
• 10XGenomics / cellranger
  10x Genomics Single Cell Analysis
  ☆425Updated 5 months ago
• rvalieris / parallel-fastq-dump
  parallel fastq-dump wrapper
  ☆299Updated 2 years ago
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆142Updated 2 years ago
• nf-core / chipseq
  ChIP-seq peak-calling, QC and differential analysis pipeline.
  ☆218Updated 3 weeks ago
• Xinglab / rmats-turbo
  ☆268Updated 8 months ago
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆134Updated last year
• mdozmorov / HiC_tools
  A collection of tools for Hi-C data analysis
  ☆600Updated last week
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆399Updated this week
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆437Updated 8 years ago