Intro to ChIPseq using HPC
☆323Jan 30, 2023Updated 3 years ago
Alternatives and similar repositories for Intro-to-ChIPseq
Users that are interested in Intro-to-ChIPseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ChIP-seq analysis notes from Ming Tang☆850Aug 5, 2024Updated last year
- ENCODE ChIP-seq pipeline☆280Feb 15, 2024Updated 2 years ago
- MACS -- Model-based Analysis of ChIP-Seq☆776May 6, 2026Updated last month
- ☆101Mar 16, 2026Updated 2 months ago
- ENCODE ATAC-seq pipeline☆452Jul 18, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆447Jun 15, 2020Updated 5 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆123Jan 15, 2023Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Nov 12, 2024Updated last year
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆241May 27, 2026Updated last week
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆248Updated this week
- Quick mining and visualization of NGS data by integrating genomic databases☆272May 5, 2023Updated 3 years ago
- Detecting sites of genomic enrichment☆201May 8, 2023Updated 3 years ago
- Application for making ENCODE Blacklists☆340Apr 23, 2021Updated 5 years ago
- Tools to process and analyze deep sequencing data.☆761Jul 23, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- IDR☆177Sep 18, 2018Updated 7 years ago
- ☆145Jan 7, 2019Updated 7 years ago
- Workflow for analyzing MNase-seq data to generate nucleosome occupancy plots☆12Dec 1, 2022Updated 3 years ago
- AQUAS TF and histone ChIP-seq pipeline☆112Jun 21, 2022Updated 3 years ago
- Atac-seq QC matrix☆22Jun 4, 2024Updated 2 years ago
- ☆660Mar 13, 2026Updated 2 months ago
- A collection of tools for Hi-C data analysis☆643May 28, 2026Updated last week
- python module to plot beautiful and highly customizable genome browser tracks☆887Jul 10, 2024Updated last year
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Jul 20, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆111May 14, 2026Updated 3 weeks ago
- Materials for short, half-day workshops☆351May 20, 2026Updated 2 weeks ago
- ☆218May 28, 2026Updated last week
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆227May 13, 2026Updated 3 weeks ago
- ☆412Jan 13, 2022Updated 4 years ago
- RNAseq analysis notes from Ming Tang☆1,090Nov 15, 2021Updated 4 years ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,744Jun 1, 2026Updated last week
- Single cell epigenomic clustering based on accessibility pattern☆23Nov 9, 2022Updated 3 years ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆439Mar 28, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ChIP peak Annotation, Comparison and Visualization☆256Apr 29, 2026Updated last month
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆20May 26, 2025Updated last year
- Summer school course materials collection☆26Aug 8, 2018Updated 7 years ago
- CUT&RUN and CUT&Tag data processing and analysis☆114Mar 4, 2025Updated last year
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆138Jan 28, 2026Updated 4 months ago
- Fast alignment and preprocessing of chromatin profiles☆222Mar 20, 2026Updated 2 months ago
- SRA Tools☆1,344Updated this week