Alternatives and similar repositories for Intro-to-ChIPseq

Users that are interested in Intro-to-ChIPseq are comparing it to the libraries listed below

• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆477Updated 3 months ago
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆427Updated last year
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆380Updated this week
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆320Updated 4 years ago
• ENCODE-DCC / chip-seq-pipeline2
  ENCODE ChIP-seq pipeline
  ☆271Updated last year
• hbctraining / DGE_workshop
  ☆395Updated 3 years ago
• sdparekh / zUMIs
  zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
  ☆284Updated last year
• hbctraining / Intro-to-DGE
  ☆206Updated last month
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆344Updated this week
• nservant / HiC-Pro
  HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
  ☆419Updated last year
• nf-core / atacseq
  ATAC-seq peak-calling and QC analysis pipeline
  ☆210Updated 2 months ago
• loosolab / TOBIAS
  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
  ☆225Updated this week
• shenlab-sinai / ngsplot
  Quick mining and visualization of NGS data by integrating genomic databases
  ☆267Updated 2 years ago
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆441Updated 5 years ago
• r3fang / SnapATAC
  Analysis Pipeline for Single Cell ATAC-seq
  ☆318Updated 2 years ago
• 10XGenomics / cellranger
  10x Genomics Single Cell Analysis
  ☆428Updated 7 months ago
• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆171Updated 4 years ago
• Cloufield / GWASTutorial
  GWAS Tutorial for Beginners
  ☆320Updated this week
• nf-core / chipseq
  ChIP-seq peak-calling, QC and differential analysis pipeline.
  ☆220Updated last week
• CGATOxford / UMI-tools
  Tools for handling Unique Molecular Identifiers in NGS data sets
  ☆520Updated 2 months ago
• liulab-dfci / TRUST4
  TCR and BCR assembly from RNA-seq data
  ☆324Updated 2 weeks ago
• GreenleafLab / ArchR
  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
  ☆431Updated 6 months ago
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆146Updated 3 years ago
• Xinglab / rmats-turbo
  ☆274Updated 9 months ago
• scRNA-tools / scRNA-tools
  Table of software for the analysis of single-cell RNA-seq data.
  ☆330Updated last week
• rvalieris / parallel-fastq-dump
  parallel fastq-dump wrapper
  ☆297Updated 2 years ago
• harvardinformatics / ATAC-seq
  ☆138Updated 6 years ago
• FelixKrueger / Bismark
  A tool to map bisulfite converted sequence reads and determine cytosine methylation states
  ☆433Updated last month
• liulab-dfci / MAESTRO
  Single-cell Transcriptome and Regulome Analysis Pipeline
  ☆291Updated 2 years ago
• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆221Updated last week