Intro to ChIPseq using HPC
☆324Jan 30, 2023Updated 3 years ago
Alternatives and similar repositories for Intro-to-ChIPseq
Users that are interested in Intro-to-ChIPseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ChIP-seq analysis notes from Ming Tang☆852Aug 5, 2024Updated 2 years ago
- MACS -- Model-based Analysis of ChIP-Seq☆782Jul 7, 2026Updated last month
- ENCODE ChIP-seq pipeline☆283Feb 15, 2024Updated 2 years ago
- ☆101Mar 16, 2026Updated 4 months ago
- ENCODE ATAC-seq pipeline☆459Jul 18, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆448Jun 15, 2020Updated 6 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆122Jan 15, 2023Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Nov 12, 2024Updated last year
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆252Aug 3, 2026Updated last week
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆242Jul 27, 2026Updated 2 weeks ago
- Quick mining and visualization of NGS data by integrating genomic databases☆273May 5, 2023Updated 3 years ago
- Detecting sites of genomic enrichment☆203May 8, 2023Updated 3 years ago
- Tools to process and analyze deep sequencing data.☆762Updated this week
- Application for making ENCODE Blacklists☆345Apr 23, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- IDR☆179Sep 18, 2018Updated 7 years ago
- ☆146Jan 7, 2019Updated 7 years ago
- AQUAS TF and histone ChIP-seq pipeline☆112Jun 21, 2022Updated 4 years ago
- Workflow for analyzing MNase-seq data to generate nucleosome occupancy plots☆12Dec 1, 2022Updated 3 years ago
- ☆662Updated this week
- Atac-seq QC matrix☆22Jun 4, 2024Updated 2 years ago
- A collection of tools for Hi-C data analysis☆650Jul 18, 2026Updated 3 weeks ago
- python module to plot beautiful and highly customizable genome browser tracks☆894Jul 10, 2024Updated 2 years ago
- Materials for short, half-day workshops☆364Jul 22, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆223May 28, 2026Updated 2 months ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆113Jul 27, 2026Updated 2 weeks ago
- ☆414Jan 13, 2022Updated 4 years ago
- RNAseq analysis notes from Ming Tang☆1,096Nov 15, 2021Updated 4 years ago
- Summer school course materials collection☆26Aug 8, 2018Updated 8 years ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆244Jun 9, 2026Updated 2 months ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,827Aug 1, 2026Updated last week
- ChIP peak Annotation, Comparison and Visualization☆256Apr 29, 2026Updated 3 months ago
- CUT&RUN and CUT&Tag data processing and analysis☆114Mar 4, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Single cell epigenomic clustering based on accessibility pattern☆23Nov 9, 2022Updated 3 years ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆443Mar 28, 2024Updated 2 years ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆138Jan 28, 2026Updated 6 months ago
- SRA Tools☆1,362Updated this week
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆20May 26, 2025Updated last year
- Chromatin States Map in mouse embryonic stem cell☆19Apr 11, 2018Updated 8 years ago
- Fast alignment and preprocessing of chromatin profiles☆226Mar 20, 2026Updated 4 months ago