Quick mining and visualization of NGS data by integrating genomic databases
☆269May 5, 2023Updated 2 years ago
Alternatives and similar repositories for ngsplot
Users that are interested in ngsplot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools to process and analyze deep sequencing data.☆752Jul 23, 2025Updated 8 months ago
- Genome databases generation pipeline for ngs.plot and region_analysis.☆17Sep 8, 2015Updated 10 years ago
- A tool for bigWig files.☆118May 23, 2018Updated 7 years ago
- ChIP-seq analysis notes from Ming Tang☆846Aug 5, 2024Updated last year
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- python module to plot beautiful and highly customizable genome browser tracks☆868Jul 10, 2024Updated last year
- MACS -- Model-based Analysis of ChIP-Seq☆770Mar 19, 2026Updated last week
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆87Aug 25, 2020Updated 5 years ago
- nucleosome calling using ATAC-seq☆110Dec 20, 2020Updated 5 years ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆200Jan 30, 2026Updated 2 months ago
- SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and he…☆87May 11, 2022Updated 3 years ago
- Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency☆154Nov 6, 2024Updated last year
- bradner lab computation pipeline scripts☆54Aug 22, 2025Updated 7 months ago
- Differential analysis for ChIP-seq with biological replicates☆35Jan 5, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆14Dec 22, 2025Updated 3 months ago
- Intervene: a tool for intersection and visualization of multiple genomic region and gene sets☆147Oct 28, 2023Updated 2 years ago
- Application for making ENCODE Blacklists☆334Apr 23, 2021Updated 4 years ago
- Jupyter notebook based genomic data visualization toolkit.☆253Dec 4, 2025Updated 3 months ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆177Jun 21, 2024Updated last year
- UCSC command line bioinformatic utilities☆188Jul 31, 2024Updated last year
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Nov 21, 2018Updated 7 years ago
- Detecting sites of genomic enrichment☆199May 8, 2023Updated 2 years ago
- FAN-C: Framework for the ANalysis of C-like data☆122Mar 13, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ENCODE ATAC-seq pipeline☆449Jul 18, 2024Updated last year
- ENCODE Uniform processing pipeline for ChIP-seq☆124Mar 23, 2020Updated 6 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Apr 12, 2024Updated last year
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Apr 24, 2017Updated 8 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆44Jul 6, 2021Updated 4 years ago
- ☆445Jun 15, 2020Updated 5 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆74Jan 8, 2025Updated last year
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 9 months ago
- AQUAS TF and histone ChIP-seq pipeline☆112Jun 21, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Intro to ChIPseq using HPC☆321Jan 30, 2023Updated 3 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Nov 16, 2022Updated 3 years ago
- BEDOPS: high-performance genomic feature operations☆365Apr 29, 2025Updated 11 months ago
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,419May 31, 2023Updated 2 years ago
- IDR☆175Sep 18, 2018Updated 7 years ago
- HMMRATAC peak caller for ATAC-seq data☆98Nov 12, 2024Updated last year
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Apr 16, 2021Updated 4 years ago