shenlab-sinai / ngsplotLinks
Quick mining and visualization of NGS data by integrating genomic databases
☆267Updated 2 years ago
Alternatives and similar repositories for ngsplot
Users that are interested in ngsplot are comparing it to the libraries listed below
Sorting:
- Application for making ENCODE Blacklists☆320Updated 4 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆210Updated 2 months ago
- ATAC-seq and DNase-seq processing pipeline☆166Updated 3 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- parallel fastq-dump wrapper☆297Updated 2 years ago
- Detecting sites of genomic enrichment☆193Updated 2 years ago
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆243Updated 2 years ago
- ☆274Updated 9 months ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆398Updated last month
- RNA-seq workflow using STAR and DESeq2☆344Updated this week
- SUPPA: Fast quantification of splicing and differential splicing☆280Updated last year
- STAR-Fusion codebase☆245Updated 3 weeks ago
- A collection of scripts and notes related to genomics and bioinformatics☆219Updated 2 weeks ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆224Updated last year
- GTEx & TOPMed data production and analysis pipelines☆380Updated this week
- Intro to ChIPseq using HPC☆311Updated 2 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆225Updated this week
- Fast and accurate gene fusion detection from RNA-Seq data☆246Updated 3 weeks ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆262Updated 7 months ago
- ☆138Updated 6 years ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆284Updated last year
- This Snakemake pipeline implements the GATK best-practices workflow☆258Updated 2 years ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆451Updated last year
- ENCODE ChIP-seq pipeline☆271Updated last year
- ChIP peak Annotation, Comparison and Visualization☆239Updated 4 months ago
- Web application to explore the Sequence Read Archive.☆217Updated last month
- R package for DNA methylation analysis☆235Updated last week
- Differential analysis of RNA-Seq☆306Updated 3 months ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆220Updated last week