shenlab-sinai / ngsplot
Quick mining and visualization of NGS data by integrating genomic databases
☆264Updated last year
Alternatives and similar repositories for ngsplot:
Users that are interested in ngsplot are comparing it to the libraries listed below
- Application for making ENCODE Blacklists☆295Updated 3 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆197Updated last week
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 4 years ago
- parallel fastq-dump wrapper☆288Updated last year
- This Snakemake pipeline implements the GATK best-practices workflow☆250Updated last year
- RNA-seq workflow using STAR and DESeq2☆339Updated 7 months ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆244Updated last month
- Intro to ChIPseq using HPC☆300Updated 2 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆235Updated last week
- ☆147Updated 2 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆212Updated 9 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆207Updated last month
- Detecting sites of genomic enrichment☆190Updated last year
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆209Updated last month
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆278Updated 8 months ago
- ATAC-seq and DNase-seq processing pipeline☆165Updated 2 years ago
- ChIP peak Annotation, Comparison and Visualization☆234Updated last month
- GTEx & TOPMed data production and analysis pipelines☆358Updated last month
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆207Updated last week
- ENCODE ChIP-seq pipeline☆262Updated last year
- Web application to explore the Sequence Read Archive.☆215Updated this week
- ☆129Updated 6 years ago
- ASCAT R package☆176Updated this week
- ☆244Updated 4 months ago
- SUPPA: Fast quantification of splicing and differential splicing☆272Updated 9 months ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆381Updated 3 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆145Updated 6 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆108Updated 2 years ago
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆240Updated 2 years ago