A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
☆84Mar 16, 2026Updated 6 months ago
Alternatives and similar repositories for scATAC-pro
Users that are interested in scATAC-pro are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R/Bioconductor package for working with 10x scATACseq data☆43Nov 13, 2023Updated 2 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆97Apr 29, 2020Updated 6 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆321Apr 27, 2023Updated 3 years ago
- Differential ATAC-seq toolkit☆29Dec 21, 2023Updated 2 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Feb 4, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆465Feb 18, 2025Updated last year
- Harvard FAS informatics scRNAseq workshop website☆40Aug 8, 2019Updated 7 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Feb 9, 2021Updated 5 years ago
- Single-cell ATAC-seq analysis via Latent feature Extraction☆105Aug 23, 2023Updated 3 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆312Mar 6, 2023Updated 3 years ago
- scATAC-seq data analysis tools and papers☆133Jul 1, 2025Updated last year
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆149Apr 5, 2024Updated 2 years ago
- Scasat is a single cell ATAC-seq preprocessing and analysis pipeline☆35Feb 27, 2019Updated 7 years ago
- snakemake workflow for post-processing scATACseq data☆23Jul 15, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Sep 23, 2024Updated 2 years ago
- ATAC-seq snakemake pipeline☆90Feb 13, 2020Updated 6 years ago
- chromatin Variability Across Regions (of the genome!)☆197May 1, 2026Updated 5 months ago
- Repo for website and other code for mouse sci-ATAC-seq project☆30Oct 1, 2020Updated 6 years ago
- ☆19Dec 15, 2023Updated 2 years ago
- R toolkit for the analysis of single-cell chromatin data☆430Sep 11, 2026Updated last month
- All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).☆39May 15, 2020Updated 6 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆142Dec 25, 2021Updated 4 years ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆43Dec 1, 2025Updated 10 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆13Apr 16, 2021Updated 5 years ago
- scRNA-seq data visualization from scrattch☆30Aug 20, 2025Updated last year
- A simple, intuitive and Efficient single cell binary Data Storage format☆16Oct 10, 2019Updated 7 years ago
- ENCODE ATAC-seq pipeline☆459Jul 18, 2024Updated 2 years ago
- Genome-wide contact analysis using sklearn☆78Mar 23, 2024Updated 2 years ago
- QC report generator for Hi-C pairs file☆13Sep 14, 2020Updated 6 years ago
- API for HOMER in R for Genomic Analysis using Tidy Conventions☆19Dec 1, 2021Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆101Nov 12, 2024Updated last year
- ☆48Apr 18, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆247May 8, 2023Updated 3 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆676Jun 5, 2026Updated 4 months ago
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆126Nov 10, 2025Updated 11 months ago
- ☆20Jun 8, 2023Updated 3 years ago
- Inference of switch-like differential expression along single-cell trajectories☆23Oct 24, 2017Updated 8 years ago
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆13Nov 24, 2018Updated 7 years ago