wbaopaul / scATAC-pro
A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
☆73Updated this week
Alternatives and similar repositories for scATAC-pro:
Users that are interested in scATAC-pro are comparing it to the libraries listed below
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆76Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆71Updated 4 years ago
- ☆53Updated 4 years ago
- ☆60Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆92Updated 4 years ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆33Updated 3 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆44Updated 6 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated last week
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Links to ATAC-seq analysis tools☆60Updated 3 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆67Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Analysis pipeline for ATAC-seq Data☆60Updated 3 years ago
- R implementation of MULTI-seq sample classification workflow☆61Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆46Updated 3 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated 11 months ago
- Single Cell Analysis of Five'Ends☆47Updated 11 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Updated last year
- ☆83Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆67Updated last month
- ☆57Updated 5 months ago
- ☆57Updated 4 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago