wbaopaul / scATAC-proLinks
A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
☆76Updated 2 months ago
Alternatives and similar repositories for scATAC-pro
Users that are interested in scATAC-pro are comparing it to the libraries listed below
Sorting:
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 2 weeks ago
- ☆55Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆49Updated 4 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- R package for robust clustering of single cell RNA sequencing data☆39Updated last year
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 4 months ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated last year
- Links to ATAC-seq analysis tools☆66Updated 3 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 4 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆71Updated 6 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago
- ☆64Updated last year
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago
- ☆59Updated 9 months ago
- ☆57Updated 4 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆59Updated this week
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆47Updated 10 months ago
- ☆80Updated last year
- ☆85Updated 4 years ago