wbaopaul / scATAC-proLinks
A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
☆81Updated last week
Alternatives and similar repositories for scATAC-pro
Users that are interested in scATAC-pro are comparing it to the libraries listed below
Sorting:
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆59Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- R/Bioconductor package for working with 10x scATACseq data☆42Updated 2 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆33Updated 6 years ago
- ☆87Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- mgatk: mitochondrial genome analysis toolkit☆109Updated 11 months ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆45Updated 2 years ago
- ATAC-seq Quality Control☆25Updated 2 months ago
- Clone of the Bioconductor repository for the DropletUtils package.☆63Updated 4 months ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- R implementation of MULTI-seq sample classification workflow☆65Updated 2 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆80Updated 2 years ago
- ☆55Updated 5 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆56Updated 4 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆62Updated 2 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated last year
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- R package of colors for the Buenrostro Lab☆86Updated last year