nboley / idrLinks
IDR
☆170Updated 6 years ago
Alternatives and similar repositories for idr
Users that are interested in idr are comparing it to the libraries listed below
Sorting:
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- Detecting sites of genomic enrichment☆192Updated 2 years ago
- A short tutorial on how to use RSEM☆136Updated 5 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆252Updated 4 months ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆216Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆109Updated 2 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆142Updated 2 years ago
- ASCAT R package☆181Updated 2 months ago
- ☆136Updated 6 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆187Updated 4 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆226Updated this week
- Quick mining and visualization of NGS data by integrating genomic databases☆265Updated 2 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆201Updated 3 weeks ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆249Updated 6 months ago
- SUPPA: Fast quantification of splicing and differential splicing☆275Updated 11 months ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 4 years ago
- ☆151Updated 2 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆108Updated 5 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆224Updated 3 weeks ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆147Updated 11 months ago
- Check strandedness of RNA-Seq fastq files☆124Updated 2 years ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆91Updated this week
- Generate IGV style locus tracks from bigWig files in R☆162Updated 7 months ago
- Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files☆110Updated 3 years ago
- Fast alignment and preprocessing of chromatin profiles☆200Updated this week
- ATAC-seq and DNase-seq processing pipeline☆165Updated 2 years ago
- A collection of scripts and notes related to genomics and bioinformatics☆211Updated last month
- Application for making ENCODE Blacklists☆309Updated 4 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆215Updated 4 months ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆159Updated 2 weeks ago