pinellolab / scATAC-benchmarkingLinks
Benchmarking computational single cell ATAC-seq methods
☆184Updated 4 years ago
Alternatives and similar repositories for scATAC-benchmarking
Users that are interested in scATAC-benchmarking are comparing it to the libraries listed below
Sorting:
- Bench-marking classification tools for scRNA-seq data☆188Updated 3 years ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆166Updated 2 years ago
- A tool for detecting somatic variants in single cell data☆214Updated last year
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆143Updated last year
- scATAC-seq data analysis tools and papers☆122Updated 3 months ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆168Updated last year
- my notes for scATACseq analysis☆132Updated last year
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆230Updated 2 years ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆193Updated 2 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆293Updated 2 years ago
- R package to access DoRothEA's regulons☆150Updated last year
- Episcanpy: Epigenomics Single Cell Analysis in Python☆147Updated 10 months ago
- scDIOR: Single cell data IO softwaRe☆148Updated 3 years ago
- Differential expression analysis for single-cell RNA-seq data.☆204Updated 7 months ago
- Detect doublets in single-cell RNA-seq data☆157Updated 4 years ago
- Test genes for Spatial Variation☆176Updated last year
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆130Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆168Updated 6 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆319Updated 2 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆234Updated 8 months ago
- SingleCellNet: classify single cells across species and platforms☆138Updated 2 years ago
- RNA velocity estimation in Python☆172Updated 5 months ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆205Updated 2 years ago
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆98Updated 3 weeks ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆141Updated 2 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆119Updated 2 weeks ago
- Simple simulation of single-cell RNA sequencing data☆231Updated last month
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆179Updated 3 weeks ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆157Updated last month