pinellolab / scATAC-benchmarking
Benchmarking computational single cell ATAC-seq methods
☆182Updated 4 years ago
Alternatives and similar repositories for scATAC-benchmarking
Users that are interested in scATAC-benchmarking are comparing it to the libraries listed below
Sorting:
- A tool for detecting somatic variants in single cell data☆203Updated 8 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆157Updated 2 years ago
- scATAC-seq data analysis tools and papers☆108Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆158Updated last month
- Bench-marking classification tools for scRNA-seq data☆186Updated 2 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆163Updated last year
- A guide to using a Seurat object in conjunction with RNA Velocity☆138Updated 3 years ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆144Updated 5 months ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆199Updated last year
- scDIOR: Single cell data IO softwaRe☆140Updated 3 years ago
- my notes for scATACseq analysis☆125Updated last year
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆139Updated last year
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆130Updated 2 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆281Updated 2 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆221Updated 3 months ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆193Updated 2 years ago
- Detect doublets in single-cell RNA-seq data☆149Updated 4 years ago
- Differential expression analysis for single-cell RNA-seq data.☆197Updated 2 months ago
- SingleCellNet: classify single cells across species and platforms☆137Updated last year
- Analysis Pipeline for Single Cell ATAC-seq☆317Updated 2 years ago
- reticulate-free single cell format conversion☆150Updated 5 months ago
- R package to access DoRothEA's regulons☆147Updated last year
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆113Updated this week
- RNA velocity estimation in Python☆169Updated 2 weeks ago
- chromatin Variability Across Regions (of the genome!)☆173Updated 10 months ago
- ☆90Updated 4 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆200Updated 2 years ago
- TCR and BCR assembly from RNA-seq data☆305Updated 2 weeks ago
- Test genes for Spatial Variation☆169Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆276Updated 2 years ago