ENCODE-DCC / rna-seq-pipeline
☆148Updated 2 years ago
Alternatives and similar repositories for rna-seq-pipeline:
Users that are interested in rna-seq-pipeline are comparing it to the libraries listed below
- Detecting sites of genomic enrichment☆189Updated last year
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆246Updated 2 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆109Updated 2 years ago
- Application for making ENCODE Blacklists☆296Updated 3 years ago
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- ☆131Updated 6 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆200Updated last month
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆107Updated 4 years ago
- ASCAT R package☆179Updated 3 weeks ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆210Updated 2 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆235Updated 3 weeks ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆217Updated 2 weeks ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆140Updated last year
- Discovering known and novel miRNAs from small RNA sequencing data☆147Updated 7 months ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 4 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆274Updated 9 months ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆244Updated 4 months ago
- RNA-Seq analysis workflow☆104Updated 3 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆151Updated last week
- Quick mining and visualization of NGS data by integrating genomic databases☆264Updated last year
- A collection of scripts and notes related to genomics and bioinformatics☆209Updated this week
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆213Updated 10 months ago
- ☆249Updated 4 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆251Updated last year
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- Check strandedness of RNA-Seq fastq files☆122Updated 2 years ago
- ☆116Updated last year
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆265Updated last year
- AQUAS TF and histone ChIP-seq pipeline☆108Updated 2 years ago