ENCODE-DCC / rna-seq-pipelineLinks
☆157Updated 3 years ago
Alternatives and similar repositories for rna-seq-pipeline
Users that are interested in rna-seq-pipeline are comparing it to the libraries listed below
Sorting:
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- ☆157Updated 8 months ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆147Updated 2 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆131Updated last month
- Detecting sites of genomic enrichment☆198Updated 2 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆178Updated last month
- ASCAT R package☆195Updated 4 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆120Updated 3 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆222Updated 2 months ago
- ENCODE Uniform processing pipeline for ChIP-seq☆124Updated 5 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆158Updated last month
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆293Updated 2 months ago
- Fast alignment and preprocessing of chromatin profiles☆211Updated 2 weeks ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆276Updated 2 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆250Updated this week
- Fast and accurate gene fusion detection from RNA-Seq data☆259Updated 4 months ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- release version☆58Updated 3 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆197Updated last year
- dN/dS methods to quantify selection in cancer and somatic evolution☆231Updated 8 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆219Updated last month
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 4 months ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆228Updated last year
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …