ParkerLab / ataqvLinks
A toolkit for QC and visualization of ATAC-seq results.
☆73Updated last year
Alternatives and similar repositories for ataqv
Users that are interested in ataqv are comparing it to the libraries listed below
Sorting:
- HMMRATAC peak caller for ATAC-seq data☆98Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 4 months ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- ☆32Updated 7 years ago
- Tutorial Website☆63Updated 5 years ago
- nucleosome calling using ATAC-seq☆110Updated 5 years ago
- Robust Allele Specific Quantification and quality controL☆40Updated 4 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 7 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 5 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆50Updated 6 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Links to ATAC-seq analysis tools☆77Updated 4 years ago
- ☆94Updated 6 months ago
- Enhanced version of the FastQTL QTL mapper☆71Updated 2 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 7 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆85Updated last year
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆105Updated 3 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆37Updated 7 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆45Updated 2 years ago
- ☆120Updated 2 years ago
- mgatk: mitochondrial genome analysis toolkit☆110Updated last year
- An R package for inferring the subclonal architecture of tumors☆121Updated 2 years ago
- ATAC-seq Quality Control☆25Updated 2 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆57Updated 4 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- ☆82Updated 9 months ago
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago