ParkerLab / ataqv
A toolkit for QC and visualization of ATAC-seq results.
☆69Updated 3 months ago
Alternatives and similar repositories for ataqv:
Users that are interested in ataqv are comparing it to the libraries listed below
- HMMRATAC peak caller for ATAC-seq data☆100Updated 5 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆57Updated last month
- Tutorial Website☆59Updated 4 years ago
- Links to ATAC-seq analysis tools☆65Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆49Updated 4 years ago
- ☆30Updated 6 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- Allele-specific alignment sorting☆55Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- ☆68Updated last year
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 3 months ago
- SNV calling from single cell sequencing☆97Updated 5 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated last month
- Publication quality NGS track plotting☆111Updated 2 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- Robust Allele Specific Quantification and quality controL☆39Updated 3 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆112Updated 3 months ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- Estimate locus specific human LINE-1 expression.☆34Updated 2 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆46Updated last year
- ATAC-seq Quality Control☆23Updated last week
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆58Updated last year
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago