ParkerLab / ataqv
A toolkit for QC and visualization of ATAC-seq results.
☆66Updated last month
Related projects ⓘ
Alternatives and complementary repositories for ataqv
- Tutorial Website☆53Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last week
- A toolset for profiling alternative splicing events in RNA-Seq data.☆78Updated 4 months ago
- ☆30Updated 6 years ago
- Links to ATAC-seq analysis tools☆50Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated last week
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆55Updated 4 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 5 years ago
- Detecting intron retention from RNA-Seq experiments☆53Updated 4 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 3 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆31Updated 5 years ago
- nucleosome calling using ATAC-seq☆106Updated 3 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆85Updated 3 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆30Updated 6 years ago
- An R interface to the MEME Suite☆46Updated last month
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 3 years ago
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆42Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆64Updated 5 years ago
- ☆65Updated last year
- ATAC-seq processing pipeline☆31Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆72Updated 3 months ago
- Publication quality NGS track plotting☆107Updated 2 years ago
- ATAC-seq Quality Control☆23Updated 3 weeks ago
- ATAC-seq lab for BIOINF545☆25Updated 8 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆101Updated 4 months ago
- Unsorted scripts for bioinformatics☆59Updated 3 years ago