ParkerLab / ataqvLinks
A toolkit for QC and visualization of ATAC-seq results.
☆71Updated 8 months ago
Alternatives and similar repositories for ataqv
Users that are interested in ataqv are comparing it to the libraries listed below
Sorting:
- HMMRATAC peak caller for ATAC-seq data☆99Updated 10 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆59Updated last week
- Links to ATAC-seq analysis tools☆70Updated 4 years ago
- Tutorial Website☆59Updated 4 years ago
- nucleosome calling using ATAC-seq☆107Updated 4 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆78Updated 6 months ago
- Robust Allele Specific Quantification and quality controL☆40Updated 3 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- ☆31Updated 7 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 8 months ago
- snakemake workflow for post-processing scATACseq data☆22Updated 5 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- ☆88Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆47Updated 2 months ago
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- ATAC-seq Quality Control☆24Updated 5 months ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 8 months ago
- Reference transcriptome indices build from kallisto for popular organisms☆43Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 6 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Tutorial for AMSI BioInfoSummer 2018☆30Updated 6 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆42Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆88Updated 2 months ago