macs3-project / MACS
MACS -- Model-based Analysis of ChIP-Seq
☆713Updated last week
Related projects ⓘ
Alternatives and complementary repositories for MACS
- ENCODE ATAC-seq pipeline☆389Updated 4 months ago
- Intro to ChIPseq using HPC☆288Updated last year
- ☆374Updated 2 years ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆392Updated last week
- ChIP-seq analysis notes from Ming Tang☆752Updated 3 months ago
- Collections of library structure and sequence of popular single cell genomic methods☆435Updated last week
- Tools to process and analyze deep sequencing data.☆684Updated last month
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆472Updated last month
- A repository for setting up a RNAseq workflow☆413Updated 7 years ago
- A quality control analysis tool for high throughput sequencing data☆450Updated 10 months ago
- Transcript assembly and quantification for RNA-Seq☆384Updated this week
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆421Updated 8 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆773Updated 4 months ago
- ☆438Updated 4 years ago
- Differential expression of RNA-seq data using the Negative Binomial☆360Updated last week
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆918Updated last week
- Customizable workflows based on snakemake and python for the analysis of NGS data☆388Updated this week
- Inferring CNV from Single-Cell RNA-Seq☆567Updated this week
- Fast genome-wide functional annotation through orthology assignment☆571Updated 6 months ago
- Near-optimal RNA-Seq quantification☆656Updated last week
- 10x Genomics Single Cell Analysis☆366Updated 2 months ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆491Updated last month
- Graph-based alignment (Hierarchical Graph FM index)☆478Updated this week
- RNA-seq workflow using STAR and DESeq2☆327Updated 3 months ago
- ENCODE ChIP-seq pipeline☆246Updated 9 months ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆410Updated this week
- By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline☆318Updated 5 years ago
- GTEx & TOPMed data production and analysis pipelines☆342Updated 7 months ago
- Bioinformatics one liners from Ming Tang☆455Updated 4 years ago
- RNAseq analysis notes from Ming Tang☆939Updated 3 years ago