MACS -- Model-based Analysis of ChIP-Seq
☆774Apr 8, 2026Updated 3 weeks ago
Alternatives and similar repositories for MACS
Users that are interested in MACS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ChIP-seq analysis notes from Ming Tang☆851Aug 5, 2024Updated last year
- IDR☆176Sep 18, 2018Updated 7 years ago
- Tools to process and analyze deep sequencing data.☆759Jul 23, 2025Updated 9 months ago
- Detecting sites of genomic enrichment☆201May 8, 2023Updated 2 years ago
- ENCODE ChIP-seq pipeline☆278Feb 15, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ChIP peak Annotation, Comparison and Visualization☆254Updated this week
- Application for making ENCODE Blacklists☆337Apr 23, 2021Updated 5 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Jul 6, 2021Updated 4 years ago
- Intro to ChIPseq using HPC☆323Jan 30, 2023Updated 3 years ago
- RNA-seq aligner☆2,188Mar 18, 2025Updated last year
- Quick mining and visualization of NGS data by integrating genomic databases☆272May 5, 2023Updated 2 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆124Mar 23, 2020Updated 6 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆120Jan 15, 2023Updated 3 years ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆434Mar 28, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- python module to plot beautiful and highly customizable genome browser tracks☆878Jul 10, 2024Updated last year
- ENCODE ATAC-seq pipeline☆449Jul 18, 2024Updated last year
- Analysis Pipeline for Single Cell ATAC-seq☆322Apr 27, 2023Updated 3 years ago
- bedtools - the swiss army knife for genome arithmetic☆1,030Mar 11, 2025Updated last year
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆271Jul 17, 2025Updated 9 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Jul 20, 2020Updated 5 years ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆450Feb 18, 2025Updated last year
- Near-optimal RNA-Seq quantification☆758Mar 16, 2026Updated last month
- A One-Click System for Analyzing Loop-Resolution Hi-C Experiments☆480Aug 31, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆237Updated this week
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆470Apr 21, 2026Updated last week
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,341Apr 24, 2026Updated last week
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆246Mar 23, 2026Updated last month
- ☆96Jul 6, 2025Updated 9 months ago
- HMMRATAC peak caller for ATAC-seq data☆100Nov 12, 2024Updated last year
- chromatin Variability Across Regions (of the genome!)☆188Jul 10, 2024Updated last year
- A cool place to store your Hi-C☆237Apr 27, 2026Updated last week
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆446Aug 8, 2025Updated 8 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆877Mar 11, 2026Updated last month
- ATAC-seq and DNase-seq processing pipeline☆165Jun 21, 2022Updated 3 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆309Mar 6, 2023Updated 3 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆298Nov 6, 2025Updated 5 months ago
- SRA Tools☆1,329Updated this week
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆731Apr 24, 2026Updated last week
- R toolkit for single cell genomics☆2,718Updated this week