Alternatives and similar repositories for In-depth-NGS-Data-Analysis-Course

Users that are interested in In-depth-NGS-Data-Analysis-Course are comparing it to the libraries listed below

• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆307Updated 2 years ago
• hbctraining / DGE_workshop
  ☆393Updated 3 years ago
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆418Updated 10 months ago
• crazyhottommy / ChIP-seq-analysis
  ChIP-seq analysis notes from Ming Tang
  ☆802Updated 10 months ago
• jmzeng1314 / NGS-pipeline
  By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline
  ☆325Updated 6 years ago
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆431Updated 8 years ago
• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆170Updated 4 years ago
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆369Updated 2 weeks ago
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆341Updated 10 months ago
• ENCODE-DCC / chip-seq-pipeline2
  ENCODE ChIP-seq pipeline
  ☆267Updated last year
• hbctraining / Intro-to-DGE
  ☆197Updated 2 months ago
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆467Updated 2 weeks ago
• shenlab-sinai / ngsplot
  Quick mining and visualization of NGS data by integrating genomic databases
  ☆265Updated 2 years ago
• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆720Updated last month
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆484Updated 4 years ago
• nservant / HiC-Pro
  HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
  ☆406Updated last year
• Ming-Lian / NGS-analysis
  二代测序数据分析
  ☆367Updated last year
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆397Updated this week
• FelixKrueger / Bismark
  A tool to map bisulfite converted sequence reads and determine cytosine methylation states
  ☆422Updated last month
• scRNA-tools / scRNA-tools
  Table of software for the analysis of single-cell RNA-seq data.
  ☆324Updated this week
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆309Updated 4 years ago
• sdparekh / zUMIs
  zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
  ☆280Updated 10 months ago
• thelovelab / DESeq2
  Differential expression of RNA-seq data using the Negative Binomial
  ☆390Updated 2 weeks ago
• xuzhougeng / Learn-Bioinformatics-by-RNA-seq
  ☆181Updated 7 years ago
• macs3-project / MACS
  MACS -- Model-based Analysis of ChIP-Seq
  ☆743Updated last month
• deweylab / RSEM
  RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
  ☆442Updated last year
• NBISweden / excelerate-scRNAseq
  Single RNA-seq data analysis with R (Finland, May, 2019)
  ☆224Updated 2 years ago
• rvalieris / parallel-fastq-dump
  parallel fastq-dump wrapper
  ☆295Updated 2 years ago
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆813Updated 10 months ago
• nf-core / atacseq
  ATAC-seq peak-calling and QC analysis pipeline
  ☆201Updated 3 weeks ago