GCA-VH-lab / FlaGsLinks
☆19Updated 2 years ago
Alternatives and similar repositories for FlaGs
Users that are interested in FlaGs are comparing it to the libraries listed below
Sorting:
- ☆45Updated 2 years ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Bacterial GWAS analysis☆40Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 2 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last month
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆20Updated 7 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 2 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆37Updated 2 years ago
- IslandPath standalone software☆32Updated last year
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Automatic eukaryotic taxonomic classification☆29Updated last month
- MAG Circularization Method☆33Updated 3 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 3 months ago
- ☆22Updated 4 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 11 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 8 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- UFCG: Universal Fungal Core Genes☆33Updated 4 months ago
- Prophage Activity Estimator☆26Updated last year
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 6 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆46Updated 3 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆31Updated 4 months ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated this week
- BEAV: Bacterial Element Annotation reVamped☆66Updated 7 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆31Updated this week