☆19Nov 8, 2022Updated 3 years ago
Alternatives and similar repositories for FlaGs
Users that are interested in FlaGs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Mar 12, 2026Updated 3 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54May 16, 2023Updated 3 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24May 27, 2026Updated 3 weeks ago
- R package for computing alpha and beta contributional diversity metrics☆11May 5, 2023Updated 3 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 9 months ago
- A message queue for genomic surveillance☆20Oct 14, 2021Updated 4 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆15Nov 24, 2025Updated 6 months ago
- ☆15Feb 10, 2025Updated last year
- Find clustered hits from a BLAST search☆144Jan 16, 2026Updated 5 months ago
- HiDeF (Hierarchical community Decoding Framework)☆15Jan 30, 2024Updated 2 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆46Feb 17, 2023Updated 3 years ago
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- ☆36Nov 20, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Homebrew tap for formulae to build ARB (http://www.arb-home.de) and related software.☆14May 22, 2026Updated 3 weeks ago
- Differential Count Data Analysis Toolbox☆62Feb 5, 2024Updated 2 years ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆23Nov 25, 2025Updated 6 months ago
- Efficient calculation of phylogenetic distance matrices.☆50Oct 8, 2024Updated last year
- Rapid & standardized genome annotation using protein structural information☆68Jun 12, 2026Updated last week
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆13Apr 16, 2019Updated 7 years ago
- GTDB => NCBI☆15Nov 14, 2024Updated last year
- Protein Structure Archiver☆15Sep 10, 2025Updated 9 months ago
- ☆21Oct 27, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆21Dec 12, 2024Updated last year
- Locate antiviral defence systems in prokaryotic genomes☆74Oct 22, 2024Updated last year
- Gene cluster comparison figure generator☆643Dec 22, 2025Updated 5 months ago
- ☆17Dec 7, 2022Updated 3 years ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Kasahara lab. public repository.☆14Updated this week
- Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compressio…☆24Updated this week
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆27Jul 22, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- BACNET is a Java based platform to develop website for multi-omics analysis☆12Feb 16, 2026Updated 4 months ago
- Creating plasmid maps inside ggplot.☆92Sep 2, 2025Updated 9 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated 2 years ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Mar 25, 2026Updated 2 months ago
- In-depth analysis of normalization and transformation methods for building coexpression networks from RNA-seq data.☆15Aug 4, 2023Updated 2 years ago
- Freelance bioinformaticians directory☆10Feb 10, 2023Updated 3 years ago
- Webin command line submission program.☆39Feb 18, 2026Updated 4 months ago