A community effort to create a shared resource for HMM-based RdRp discovery
☆14Feb 13, 2026Updated 2 months ago
Alternatives and similar repositories for RdRpCATCH
Users that are interested in RdRpCATCH are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆29Jul 21, 2025Updated 9 months ago
- ☆14Updated this week
- An community curated awesome list of tools, software, databases and other resources for working/analysing RNA Viruses☆22Aug 15, 2025Updated 8 months ago
- ☆10Feb 23, 2024Updated 2 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A set of programs for the taxonomic analysis of genetic sequences☆15Jun 12, 2023Updated 2 years ago
- Prophage Activity Estimator☆33May 30, 2024Updated last year
- A series of small Biopython scripts for downloading sequence data off NCBI's Genbank.☆15May 2, 2017Updated 8 years ago
- Tool for unsupervised contig binning from viral metagenomes☆18Oct 22, 2021Updated 4 years ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆21Dec 12, 2024Updated last year
- ☆42Feb 14, 2021Updated 5 years ago
- A listing of software, tools and databases useful for virome analysis☆71Apr 19, 2026Updated last week
- GeneValidator: Identify problems with predicted genes☆49Mar 1, 2024Updated 2 years ago
- ☆20Feb 12, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆89Dec 27, 2024Updated last year
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆23Jan 8, 2026Updated 3 months ago
- Find endogenous viral elements in genomes☆21Sep 24, 2025Updated 7 months ago
- LucaProt: A novel deep learning framework that incorporates protein amino acid sequence and structural information to predict protein fun…☆224Jan 29, 2026Updated 3 months ago
- R scripts to help with your flow cytometry analysis☆29Jun 17, 2022Updated 3 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆38Apr 9, 2026Updated 2 weeks ago
- WtP: Phage identification via nextflow and docker or singularity☆105Mar 19, 2026Updated last month
- Aligns short reads using dynamic seed size with strobemers☆195Apr 22, 2026Updated last week
- A comprehensive pipeline for short read metagenomic data☆25Aug 25, 2020Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Feb 26, 2026Updated 2 months ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- Protein structure alignment and search algorithm☆80Updated this week
- ☆10Mar 5, 2019Updated 7 years ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated 10 months ago
- ☆23May 13, 2024Updated last year
- MAGScoT - a MAG scoring and refinement tool☆44Apr 8, 2026Updated 3 weeks ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆87Mar 12, 2026Updated last month
- Wavefront alignment algorithm (WFA) in Golang☆31Jul 26, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 3 months ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆51Apr 21, 2026Updated last week
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 8 months ago
- CLI tool to annotate genes with KOfam☆94Jun 6, 2023Updated 2 years ago
- Discovery of conserved gene clusters in multiple genomes☆130Jan 16, 2026Updated 3 months ago
- Emending Alignment of Spliced Transcript Reads☆12Jan 19, 2026Updated 3 months ago