Alternatives and similar repositories for split-seq-pipeline

Users that are interested in split-seq-pipeline are comparing it to the libraries listed below

• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆41Updated 2 years ago
• kendomaniac / rCASC
  rCASC: reproducible Classification Analysis of Single Cell Sequencing Data
  ☆13Updated 6 months ago
• umccr / neoantigens
  🏺 Exploring novel tumor epitope identification
  ☆36Updated 5 years ago
• Roy-lab / HiC-Reg
  HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals
  ☆11Updated 5 years ago
• liuqivandy / scRNABatchQC
  ☆12Updated 4 years ago
• asrhou / scMatch
  scMatch: a single-cell gene expression profile annotation tool using reference datasets
  ☆24Updated 3 years ago
• GreenleafLab / motifmatchr
  Fast motif matching in R
  ☆46Updated last year
• BaderLab / AgingMouseBrainCCInx
  Predicted cell-cell interactions of the aging mouse brain
  ☆20Updated 6 years ago
• aertslab / GENIE3
  GENIE3 (GEne Network Inference with Ensemble of trees) R-package
  ☆37Updated 3 years ago
• Oshlack / splatter-paper
  Data and analysis for the Splatter paper
  ☆29Updated 7 years ago
• mruffalo / sc-rna-seq-pipeline
  ☆22Updated 5 years ago
• sinanugur / cellsnake
  Cellsnake tool main repo
  ☆35Updated last year
• statbiophys / HLAGuessr
  ☆18Updated 6 months ago
• klarman-cell-observatory / perturbseq
  Perturb-seq analysis package
  ☆15Updated last year
• KellisLab / scdemon
  single-cell decorrelated module networks
  ☆27Updated last year
• const-ae / transformGamPoi-Paper
  ☆28Updated 2 years ago
• shtoneyan / gopher
  Toolset for training quantitative sequence to function models.
  ☆23Updated last year
• kundajelab / simdna
  A python library for creating simulated regulatory DNA sequences
  ☆39Updated 2 years ago
• ivirshup / constclust
  Consistent Clusters for scRNA-seq
  ☆10Updated 4 years ago
• PYangLab / Cepo
  Uncovering cell identity genes using differential stability of expression in single cells.
  ☆12Updated last year
• jdime / scRNAseq_cell_cluster_labeling
  Scripts to run and benchmark scRNA-seq cell cluster labeling methods
  ☆48Updated 5 years ago
• yanailab / moana
  Moana: Robust cell type classification of single-cell RNA-Seq data
  ☆24Updated 6 years ago
• tianshilu / QBRC-Neoantigen-Pipeline
  QBRC Neoantigen calling pipeline with CSiN calculation embedded
  ☆24Updated 3 years ago
• Xinglab / IRIS
  IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
  ☆26Updated last year
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• cboix / EPIMAP_ANALYSIS
  Epimap processing and analysis code repository
  ☆33Updated 3 years ago
• ding-lab / somaticwrapper
  Detect somatic variants from tumor and normal WGS/WXS data
  ☆19Updated 2 weeks ago
• neurogenomics / EnformerCelltyping
  Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…
  ☆15Updated 4 months ago
• SindiLab / ACTIVA
  The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…
  ☆11Updated 2 years ago
• JanZrimec / DeepExpression
  ☆33Updated 2 years ago