eudoraleer / scasaLinks
SCASA: Single cell transcript quantification tool
☆21Updated last year
Alternatives and similar repositories for scasa
Users that are interested in scasa are comparing it to the libraries listed below
Sorting:
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- ☆20Updated last year
- ☆22Updated last year
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- ☆23Updated 3 years ago
- Model-based analysis of APA using 3' end-linked reads☆10Updated 4 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Explore the cancer relevance of your gene list☆51Updated 6 months ago
- ☆17Updated last year
- A single cell sequencing read simulator.☆33Updated 10 months ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Updated 3 years ago
- iread☆25Updated 4 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Docker container for genomics analyses in R.☆25Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated last week
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- ☆38Updated 2 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ChromSCape☆14Updated last month
- scover☆23Updated last year
- ☆17Updated last year
- Collection of R functions used in the Hochwagen Lab☆12Updated 3 weeks ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 4 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 4 months ago