xuyu-cam / atlas_genetic_scores_omic_traits
This repository houses scripts for training genetic scores of omic traits in INTERVAL
☆23Updated last year
Alternatives and similar repositories for atlas_genetic_scores_omic_traits:
Users that are interested in atlas_genetic_scores_omic_traits are comparing it to the libraries listed below
- ☆46Updated 5 months ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- ☆78Updated 2 years ago
- Multiscale embedded gene co-expression network analysis☆51Updated last year
- An R package for phenotype generation and association testing for phenome wide associations studies (PheWAS)☆14Updated 9 months ago
- GREP: Genome for REPositioning drugs☆40Updated 2 years ago
- deTS☆18Updated 5 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆54Updated 2 years ago
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 3 years ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆35Updated 7 months ago
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆43Updated 2 months ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆57Updated 2 months ago
- Kidney Epigenome and Transcriptome-based multi-stage Prioritization☆17Updated 2 years ago
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆17Updated 5 months ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 5 years ago
- package for the causal TWAS project☆41Updated this week
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆25Updated 2 years ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 3 years ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆31Updated 4 years ago
- ☆51Updated 2 months ago
- ☆11Updated 4 years ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆50Updated 6 months ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- ☆42Updated 3 years ago
- FLAMES: Accurate gene prioritization in GWAS loci☆32Updated last month
- Software for estimating correlation of trait effect sizes across populations☆45Updated 2 weeks ago
- CELLEX (CELL-type EXpression-specificity)☆41Updated last year
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆23Updated 5 years ago
- Pipeline that runs two-sample Mendelian randomization on molecular QTLs and GWAS loci and tests for horizontal pleiotropy.☆26Updated last year
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago