cbg-ethz / 5-virus-mix

Related projects ⓘ

Alternatives and complementary repositories for 5-virus-mix

• dayzerodx / counterr
  ☆30Updated 6 months ago
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆54Updated last year
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆48Updated 7 months ago
• mattloose / RUscripts
  Scripts for implementing read until and other examples.
  ☆31Updated 4 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 4 years ago
• EvolBioInf / phylonium
  ♥ Fast and Accurate Estimation of Evolutionary Distances
  ☆27Updated 6 months ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆45Updated 5 years ago
• arq5x / nanopore-scripts
  Various scripts and recipes for working with nanopore data
  ☆34Updated 8 years ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆45Updated 3 years ago
• uio-bmi / two_step_graph_mapper
  ☆21Updated 5 years ago
• HaploKit / Strainline
  Full-length de novo viral haplotype reconstruction from noisy long reads
  ☆17Updated last year
• mills-lab / svelter
  Approach to identify simple and complex structural genomic rearrangements using a randomized approach
  ☆20Updated 5 years ago
• vgteam / graph-genomics-review
  Pangenome graphs (review article on graph-based pangenomic methods)
  ☆71Updated 4 years ago
• HaploConduct / HaploConduct
  Haplotype-aware genome assembly toolkit
  ☆29Updated 4 years ago
• guyduche / Blast2Bam
  Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
  ☆46Updated 3 years ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆24Updated 2 weeks ago
• CSB5 / INC-Seq
  INC-Seq: Accurate single molecule reads using nanopore sequencing
  ☆13Updated 4 years ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆48Updated last month
• iqbal-lab / Mykrobe-predictor
  Antibiotic resistance predictions in minutes on a laptop
  ☆50Updated 5 years ago
• kamimrcht / CARNAC-LR
  ☆15Updated 5 years ago
• benedictpaten / marginPhase
  ☆34Updated 4 years ago
• dillonl / graphite
  Graphite - Graph-based variant adjudication
  ☆28Updated 3 years ago
• sgearle / bugwas
  Locus and lineage tests for bacterial GWAS
  ☆30Updated 7 years ago
• marbl / VALET
  A pipeline for detecting mis-assemblies in metagenomic assemblies.
  ☆14Updated 7 years ago
• jkbonfield / crumble
  Exploration of controlled loss of quality values for compressing CRAM files
  ☆34Updated last year
• mourisl / Rascaf
  Scaffolding with RNA-seq read alignment
  ☆20Updated 6 years ago
• thackl / minidot
  Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2
  ☆74Updated 8 years ago
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆56Updated 3 months ago
• cerebis / bin3C
  Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.
  ☆23Updated 9 months ago