A method to identify structural variation from sequencing data in target regions
☆32Sep 23, 2020Updated 6 years ago
Alternatives and similar repositories for BreaKmer
Users that are interested in BreaKmer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 3 months ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- Ultra-fast, high-performing structural variation (SV) detector☆25Apr 26, 2023Updated 3 years ago
- Shimmer is a software package for the characterization of genetic differences between two very similar samples, e.g., a tumor sample and …☆12Jan 12, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 6 years ago
- ☆15Mar 9, 2018Updated 8 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated 2 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Apr 19, 2022Updated 4 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Home of the Genomic Feature and Variation Ontology (GFVO)☆16Mar 13, 2021Updated 5 years ago
- Tools for bam file processing☆56Apr 20, 2015Updated 11 years ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Structural variant detection and association testing☆109Feb 2, 2023Updated 3 years ago
- Population-scale detection of novel sequence insertions☆28Aug 16, 2022Updated 4 years ago
- ☆13Sep 11, 2025Updated last year
- ☆26Aug 10, 2021Updated 5 years ago
- Papillomavirus genome annotation tool☆10May 2, 2023Updated 3 years ago
- ☆11Apr 3, 2023Updated 3 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 10 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25May 2, 2018Updated 8 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- RTG Core: Software for alignment and analysis of next-gen sequencing data.☆53May 27, 2025Updated last year
- Using k-mers to call HLA alleles in RNA sequencing data☆23Jul 26, 2018Updated 8 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆345Feb 22, 2026Updated 8 months ago
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 10 years ago
- Canvas - Copy number variant (CNV) calling from DNA sequencing data☆129Apr 20, 2026Updated 6 months ago
- PopSTR - A Population based microsatellite genotyper☆33Oct 23, 2023Updated 3 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆164Mar 28, 2023Updated 3 years ago
- RAPTR-SV uses Read Pair and Split Read methods to identify structural variants in paired-end WGS data☆10Aug 18, 2016Updated 10 years ago
- reference free variant assembly☆34Jul 14, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Structural variant and indel caller for mapped sequencing data☆467Oct 11, 2025Updated last year
- de Bruijn Graph-based read aligner☆36Sep 3, 2018Updated 8 years ago
- Scaffolding genomes using synthetic long read clouds☆20Oct 11, 2016Updated 10 years ago
- Visualize next generation sequencing reads over putative structural variants☆13Aug 25, 2014Updated 12 years ago
- assembly evaluation tool☆36May 11, 2022Updated 4 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆38Jul 1, 2024Updated 2 years ago
- ☆13Jun 21, 2017Updated 9 years ago