smarco / gem3-mapper
GEM-Mapper v3
☆58Updated 4 years ago
Alternatives and similar repositories for gem3-mapper:
Users that are interested in gem3-mapper are comparing it to the libraries listed below
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 8 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 8 months ago
- Tip and tricks for BAM files☆84Updated 6 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- processing 10x genomics reads☆24Updated 5 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 3 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆57Updated 3 months ago
- A software for calculating telomere length☆67Updated 6 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 8 years ago
- UCSC Nanopore☆43Updated 5 years ago
- ENCODE long read RNA-seq pipeline☆44Updated 2 years ago
- heuristics to merge structural variant calls in VCF format.☆35Updated 8 years ago
- TIDDIT - structural variant calling☆73Updated last week
- Splicing Prediction Pipeline☆13Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 months ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆34Updated last year
- for visual evaluation of read support for structural variation☆51Updated 7 months ago
- An awk-like VCF parser☆55Updated last year
- CN-Learn☆29Updated 5 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- Software for performing UDiTaS sequencing analysis.☆13Updated 2 years ago
- Very simple, pure python, BAM file reader☆79Updated 5 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆20Updated 2 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Concordance and contamination estimator for tumor–normal pairs☆56Updated 3 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆79Updated 11 months ago