pughlab / bamgineerLinks
Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets
☆38Updated 5 years ago
Alternatives and similar repositories for bamgineer
Users that are interested in bamgineer are comparing it to the libraries listed below
Sorting:
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆37Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆23Updated 5 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆49Updated this week
- Gene Fusion Visualiser☆51Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Filters for false-positive mutation calls in NGS☆31Updated 6 years ago
- A comprehensive toolkit for mutational signature analysis☆39Updated last year
- Mapped QC analysis program☆44Updated 7 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated 2 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Method to detect exonic CNVs in NGS Gene Targeted Panels☆16Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- Codes and Data for FFPEsig manuscript☆17Updated last year
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- QDNAseq package for Bioconductor☆50Updated last year