Compute postmortem damage patterns and decontaminate ancient genomes
☆22Apr 20, 2021Updated 5 years ago
Alternatives and similar repositories for PMDtools
Users that are interested in PMDtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- ☆15May 30, 2024Updated 2 years ago
- Workflow for processing Illumina sequencing runs for ancient human DNA☆27Oct 29, 2020Updated 5 years ago
- Repository with documentation file of our Jan 22-24 workshop on Computational Population Genetics in Jena, Germany.☆15May 9, 2019Updated 7 years ago
- Maximum a posteriori estimate of contamination for ancient samples☆25Nov 4, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage☆21Nov 18, 2023Updated 2 years ago
- Software to call ROHs☆20Apr 9, 2026Updated 3 months ago
- gargammel is an ancient DNA simulator☆39Jul 22, 2024Updated 2 years ago
- ☆49Jun 26, 2026Updated 3 weeks ago
- This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.☆17Aug 6, 2024Updated last year
- small scripts, functions or bits of code for parsing genomic data☆14Sep 24, 2022Updated 3 years ago
- A simple tool to calculate metrics from a BAM file and filter references with uneven coverages☆24Apr 24, 2026Updated 2 months ago
- An assembly workflow for analysing data in the Earth Biogenome Project pilot project.☆19May 19, 2026Updated 2 months ago
- Module for analysing admixture graphs☆29Apr 30, 2018Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A post-mapping authentication toolkit for ancient metagenomics☆22Mar 30, 2026Updated 3 months ago
- ☆11Sep 4, 2024Updated last year
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆15May 29, 2024Updated 2 years ago
- mapDamage: tracking and quantifying damage patterns in ancient DNA sequences☆51Jul 14, 2025Updated last year
- Heuristic, parsimony-based ancestral recombination graph inference☆17Aug 25, 2021Updated 4 years ago
- Simulation of Epistasis Local adaptation, with Ancestry and Mate choice☆11Apr 22, 2023Updated 3 years ago
- Madhav Sales Analysis and Power Bi Dashboard☆12Dec 23, 2023Updated 2 years ago
- Support material for the "Comparative Genomics Laboratory" classes of the MSc in Biodiversity and Evolution at the University of Bologna.☆13Feb 27, 2026Updated 4 months ago
- Eigen tools by Nick Patterson and Alkes Price lab☆204Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- RNA-Seq Mutation Detection☆28Mar 3, 2026Updated 4 months ago
- MSMC2 Scripts☆28May 29, 2026Updated last month
- Probabilistic Inference of Molecular Evolution☆10Sep 6, 2021Updated 4 years ago
- Detecting IBD within low coverage ancient DNA data. Development Repository for software package that contains code for manuscript.☆15Apr 22, 2026Updated 3 months ago
- TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly☆28Jan 2, 2022Updated 4 years ago
- HyPhy tutorials☆11Apr 9, 2018Updated 8 years ago
- Generic Disease Modelling System☆15Feb 27, 2013Updated 13 years ago
- The MitoGeneExtractor can be used to extract protein coding mitochondrial genes, such as COI and others from short and long read sequenci…☆10Apr 5, 2026Updated 3 months ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆12Nov 15, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tool for monitoring and anomaly detection of 3D Concrete Printing using Computer Vision☆14Oct 18, 2022Updated 3 years ago
- ☆53May 12, 2026Updated 2 months ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆147Oct 4, 2016Updated 9 years ago
- Tools test whether admixture occurred and more☆232Jul 13, 2026Updated last week
- ☆15Mar 13, 2026Updated 4 months ago
- Bayesian reconstruction of ancient DNA fragments☆31Aug 6, 2024Updated last year
- Heuristic search algorithm for fitting qpGraph models☆11Aug 4, 2022Updated 3 years ago