pontussk / PMDtoolsLinks
Compute postmortem damage patterns and decontaminate ancient genomes
☆19Updated 4 years ago
Alternatives and similar repositories for PMDtools
Users that are interested in PMDtools are comparing it to the libraries listed below
Sorting:
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆181Updated 11 months ago
- Reference-free profiling of polyploid genomes☆135Updated 2 months ago
- Recovering genes from targeted sequence capture data☆130Updated 5 months ago
- MSMC2 Scripts☆28Updated 2 months ago
- Scripts for analysis used during the course☆93Updated last year
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Updated last year
- SMC++ infers population history from whole-genome sequence data.☆168Updated last year
- Yet another Hi-C scaffolding tool☆168Updated last year
- Topology weighting by iterative sampling of sub-trees☆82Updated 11 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84Updated 4 years ago
- Tutorials on phylogenetic and phylogenomic inference☆49Updated 7 months ago
- Hybridization detection using phylogenetic invariants☆52Updated last year
- Code to compute the XP-CLR statistic to infer natural selection☆101Updated 3 years ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆133Updated last year
- Foreign Contamination Screening caller scripts and documentation☆151Updated 8 months ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆148Updated last month
- A post-mapping authentication toolkit for ancient metagenomics☆16Updated this week
- MITObim - mitochondrial baiting and iterative mapping☆114Updated 4 years ago
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆11Updated 2 years ago
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆110Updated last week
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆82Updated 5 months ago
- Tutorial about R package PopGenome☆44Updated 6 years ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆88Updated last year
- Version 5 of the CAFE phylogenetics software☆155Updated 9 months ago
- NLR-Annotator upload☆74Updated 2 years ago
- Plastid Genome Annotator☆54Updated 5 years ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆162Updated last year
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆100Updated 3 weeks ago
- Quantifying Introgression via Branch Lengths☆55Updated 3 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆106Updated 2 weeks ago