pontussk / PMDtools
Compute postmortem damage patterns and decontaminate ancient genomes
☆15Updated 3 years ago
Alternatives and similar repositories for PMDtools:
Users that are interested in PMDtools are comparing it to the libraries listed below
- Tutorial about R package PopGenome☆41Updated 5 years ago
- Topology weighting by iterative sampling of sub-trees☆73Updated 2 weeks ago
- MSMC2 Scripts☆23Updated 10 months ago
- Tutorials on evolutionary genomics☆42Updated 2 years ago
- Hybridization detection using phylogenetic invariants☆44Updated 2 months ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆58Updated 3 months ago
- Tutorials on phylogenetic and phylogenomic inference☆41Updated 8 months ago
- ☆18Updated last year
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆30Updated 10 months ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 4 years ago
- RADseq workflow using STACKS☆57Updated last month
- Automated de novo assembly of whole chloroplast genomes.☆44Updated 3 months ago
- A program to call variants from genome alignment☆77Updated 10 months ago
- ☆26Updated last year
- Detecting natural selection from population-based genetic data☆27Updated 5 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆37Updated 4 years ago
- Assessing confidence in introgression among four populations☆27Updated 3 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆26Updated last week
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆67Updated 2 weeks ago
- A organelle de novo genome assembly toolkit☆51Updated last month
- Pipelines and tools for the processing of ancient and modern HTS data.☆43Updated 5 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆78Updated 3 years ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆63Updated 8 months ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆35Updated 8 months ago
- feature-based deep learning for the identification of selective sweeps☆51Updated 4 months ago
- DFOIL: Introgression Testing for Five Taxa☆29Updated 3 years ago
- A pipeline that accepts a VCF file to run through Admixture☆57Updated 2 weeks ago
- Quantifying Introgression via Branch Lengths☆49Updated 2 years ago
- ☆38Updated last year