jkbonfield / crumbleLinks
Exploration of controlled loss of quality values for compressing CRAM files
☆36Updated 2 years ago
Alternatives and similar repositories for crumble
Users that are interested in crumble are comparing it to the libraries listed below
Sorting:
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 3 months ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 8 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 9 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 7 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 6 months ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 5 years ago
- Structural variant (SV) analysis tools☆39Updated last year
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Long-read splice alignment with high accuracy☆64Updated last year
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 3 weeks ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 3 months ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Structural variant caller☆55Updated 4 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 9 months ago