jkbonfield / crumbleLinks
Exploration of controlled loss of quality values for compressing CRAM files
☆36Updated 2 years ago
Alternatives and similar repositories for crumble
Users that are interested in crumble are comparing it to the libraries listed below
Sorting:
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated last month
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Long-read splice alignment with high accuracy☆63Updated last year
- Functions to compare a SV call sets against a truth set.☆30Updated 4 months ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- Structural variant (SV) analysis tools☆38Updated last year
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Easy genomic regions for short-read variant calling☆44Updated last month
- ☆31Updated 3 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 7 months ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Detect novel (and reference) STR expansions from short-read data☆68Updated 2 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated last month
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆18Updated 7 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 9 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- SV genotyping with long reads☆40Updated 2 years ago