Exploration of controlled loss of quality values for compressing CRAM files
☆36Feb 23, 2023Updated 3 years ago
Alternatives and similar repositories for crumble
Users that are interested in crumble are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- ☆21Dec 26, 2025Updated 3 months ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 8 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆39Feb 20, 2026Updated last month
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆40Jul 15, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- A curated list of awesome clonality and tumor heterogeneity resources☆15Jun 25, 2019Updated 6 years ago
- de Bruijn Graph-based read aligner☆35Sep 3, 2018Updated 7 years ago
- ☆23Feb 22, 2023Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25May 2, 2018Updated 7 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Jul 16, 2017Updated 8 years ago
- Efficient, parallel compression for terabyte-scale data☆61Feb 25, 2026Updated last month
- Functions to compare a SV call sets against a truth set.☆30Jun 18, 2025Updated 9 months ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- A shell script which implements GATK pipeline for variant calling.☆15Nov 30, 2014Updated 11 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆158Feb 12, 2026Updated last month
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Nov 19, 2025Updated 4 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆36Oct 27, 2025Updated 5 months ago
- Nextflow hackathon 2017 projects☆10Sep 28, 2017Updated 8 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆138Sep 16, 2025Updated 6 months ago
- Python bindings to minimap2☆16Sep 18, 2017Updated 8 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Mar 10, 2026Updated 2 weeks ago
- expressions on VCFs☆91Mar 17, 2026Updated last week
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆19Jan 15, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 7 years ago
- Assembly Based ReAligner☆75May 24, 2018Updated 7 years ago
- Automated pipeline for running CoalHMM☆13Jan 9, 2026Updated 2 months ago
- A tool to find and visualize rearrangements in DNA sequences☆16Sep 16, 2019Updated 6 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Jun 27, 2022Updated 3 years ago
- ultrafast structural variation detection from circular consensus sequencing reads☆13Mar 8, 2022Updated 4 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 2 years ago
- ☆21Jan 11, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Nov 5, 2020Updated 5 years ago
- Structural Variant Index☆76Dec 13, 2024Updated last year
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Efficient construction of the BWT using string compression☆22Mar 17, 2026Updated last week
- A cheat sheet for Bioinformatians.☆11Aug 9, 2017Updated 8 years ago
- Read visualizer for structural variants☆84Aug 18, 2018Updated 7 years ago