raphael-group / NAIBRLinks
Novel Adjacency Identification with Barcoded Reads
☆13Updated 3 years ago
Alternatives and similar repositories for NAIBR
Users that are interested in NAIBR are comparing it to the libraries listed below
Sorting:
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Hemang Parikh☆11Updated 9 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Hidden Markov Model based Copy number caller☆20Updated 7 months ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 6 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 5 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Recommended Graphtyper pipelines☆14Updated 4 years ago
- Sample Contamination Estimate from VCF☆19Updated 7 months ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆23Updated 9 months ago
- ☆12Updated last month
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆16Updated 7 years ago
- ☆16Updated 4 months ago
- Assemble the Genome in a Bottle sequencing data☆10Updated 7 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 11 months ago
- ☆11Updated 2 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 5 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 8 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Structural variant (SV) analysis tools☆36Updated 11 months ago