Alternatives and similar repositories for scPRS

Users that are interested in scPRS are comparing it to the libraries listed below

• jbryois / scRNA_disease
  Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1
  ☆18Updated 5 years ago
• hakyimlab / scPrediXcan
  ☆29Updated last month
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆57Updated 3 years ago
• perslab / CELLEX
  CELLEX (CELL-type EXpression-specificity)
  ☆43Updated 2 years ago
• ylaboratory / seismic
  Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data
  ☆17Updated last month
• dengchunyu / scPagwas
  Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data
  ☆17Updated 8 months ago
• rhhao / csMR
  Perform cell-stratified MR analysis through integrating GWAS and QTL data
  ☆32Updated 3 weeks ago
• hbliu / Kidney_Epi_Pri
  Kidney Epigenome and Transcriptome-based multi-stage Prioritization
  ☆17Updated 2 years ago
• sulab-wmu / scPagwas
  Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data
  ☆46Updated last month
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆16Updated 2 years ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆41Updated 5 months ago
• TiffanyAmariuta / TCSC
  TCSC (Tissue co-regulation score regression) is a statistical genetics method to identify causal tissues in diseases and complex traits.
  ☆13Updated 10 months ago
• konumat / Trans-Phar
  GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline
  ☆18Updated 4 years ago
• NathanSkene / EWCE
  Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
  ☆59Updated 5 months ago
• Kyoko-wtnb / FUMA_scRNA_data
  Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)
  ☆23Updated 5 years ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆27Updated 2 weeks ago
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆18Updated 3 years ago
• sunnyzwu / stromal_subclasses
  code for data processing and visualisation associated with the stromal subclasses manuscript
  ☆11Updated 4 years ago
• immunogenomics / GeNA
  Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…
  ☆14Updated 10 months ago
• clagiamba / moloc
  ☆36Updated 4 years ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆46Updated last year
• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆77Updated 3 months ago
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆55Updated 4 years ago
• BennyStrobes / TGFM
  Tissue-Gene Fine-Mapping
  ☆21Updated 4 months ago
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆45Updated last year
• bsml320 / scGWAS
  A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …
  ☆26Updated 2 years ago
• ZJU-UoE-CCW-LAB / scCDC
  single-cell Contamination Detection and Correction
  ☆12Updated 6 months ago
• kkdey / GSSG
  Gene Set + S2G strategy annotations analyzed for disease architecture
  ☆53Updated 2 years ago
• marcoralab / MRcovid
  ☆11Updated 3 years ago