bowang-lab / BIONICLinks
Biological Network Integration using Convolutions
☆63Updated last year
Alternatives and similar repositories for BIONIC
Users that are interested in BIONIC are comparing it to the libraries listed below
Sorting:
- CellBox: Interpretable Machine Learning for Perturbation Biology☆56Updated 2 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆52Updated 5 months ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆53Updated 3 years ago
- ☆70Updated last week
- Discovering novel cell types across heterogenous single-cell experiments☆123Updated 3 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆156Updated last week
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆22Updated last month
- repository containing analysis scripts and auxiliary files☆36Updated 5 years ago
- ☆98Updated 2 months ago
- Network-based project to explore gene connectivity through biological scales☆23Updated last year
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆55Updated 4 years ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆42Updated last year
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Updated 2 years ago
- ☆64Updated 2 years ago
- Prize-Collecting Steiner Forests for Interactomes☆62Updated last year
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆59Updated this week
- SIMBA: SIngle-cell eMBedding Along with features☆66Updated last year
- Diffusion model for gene regulatory network inference.☆24Updated 5 months ago
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆95Updated last year
- ☆19Updated 2 years ago
- Adversarial generation of gene expression data using Generative Adversarial Networks☆29Updated 4 years ago
- Code for the analyses in the human reference interactome paper.☆28Updated 3 years ago
- CMap Notebooks for LINCS 2020 Workshop☆49Updated 4 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 4 years ago
- ☆68Updated 5 months ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆77Updated 10 months ago
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆89Updated 3 years ago
- pytorch dataloaders for single-cell perturbation data☆40Updated last month