Biological Network Integration using Convolutions
☆66Jan 17, 2024Updated 2 years ago
Alternatives and similar repositories for BIONIC
Users that are interested in BIONIC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HiDeF (Hierarchical community Decoding Framework)☆15Jan 30, 2024Updated 2 years ago
- This is the public repository for the EPIC tool.☆19Aug 3, 2022Updated 4 years ago
- Python implementation of Spatial Analysis of Functional Enrichment (SAFE)☆47Aug 26, 2025Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆46Sep 20, 2024Updated 2 years ago
- A Python FASTA file Parser and Writer.☆17Sep 3, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Issues and pull requests for BiocStyle should go here.☆15Jul 21, 2026Updated 2 months ago
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 6 years ago
- The Loss-of-Function ToolKit (LoFTK) allows efficient and automated prediction of LoF variants from both genotyped and sequenced genomes,…☆10Jul 30, 2025Updated last year
- Kdrew's scripts for handling protein complex map data☆14Jun 17, 2026Updated 3 months ago
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆100Jan 14, 2025Updated last year
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆15Apr 12, 2023Updated 3 years ago
- ☆16Jun 5, 2022Updated 4 years ago
- CliXO algorithm re-implemented☆16Nov 9, 2021Updated 4 years ago
- HuBMAP Data Portal front end☆13Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Build project for all CEDAR Java repositories☆13Updated this week
- Network Reverse Engineering through AP inference of Mutual Information☆92Mar 6, 2023Updated 3 years ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆21Aug 17, 2026Updated last month
- A Python package for gene network analysis☆33Jun 22, 2022Updated 4 years ago
- GeneMANIA helps you predict the function of your favourite genes and gene sets.☆45Sep 29, 2025Updated last year
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆55Jun 15, 2021Updated 5 years ago
- ☆29Feb 23, 2026Updated 7 months ago
- Manubot for white paper☆13Sep 29, 2020Updated 6 years ago
- R package for gene selection using k-NN graphs.☆15Jun 12, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- gSparse: C++ Library for Graph Sparsification☆12Apr 25, 2020Updated 6 years ago
- MATLAB implementation of Gene Set Enrichment Analysis (GSEA) method for finding pathways which can show more complex relation between cha…☆10Sep 7, 2022Updated 4 years ago
- Bam to Pandas DataFrame, quickly☆13May 10, 2025Updated last year
- Cytoscape 3 implementation bundles.☆43Sep 21, 2026Updated 2 weeks ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆190Feb 25, 2025Updated last year
- Feature selection for preserving biological trajectories in single-cell data☆21Jun 24, 2026Updated 3 months ago
- ☆24Mar 20, 2023Updated 3 years ago
- Benchmarking gene embeddings on single, paired, and gene set tasks☆23Nov 29, 2025Updated 10 months ago
- The implementation of paper "HPOFiller: identifying missing protein-phenotype associations by graph convolutional network".☆12Dec 24, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A multi-hop Q/A architecture based on transformers and GCNs.☆16Aug 12, 2019Updated 7 years ago
- k-Nearest Neighbor Information Estimator☆27Jan 7, 2019Updated 7 years ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Apr 3, 2024Updated 2 years ago
- TOP results by CONfident efFECT Sizes.☆15Dec 9, 2024Updated last year
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆45Oct 20, 2025Updated 11 months ago
- ☆12Feb 12, 2024Updated 2 years ago
- ☆10Aug 29, 2023Updated 3 years ago