bowang-lab / BIONIC
Biological Network Integration using Convolutions
☆61Updated last year
Alternatives and similar repositories for BIONIC:
Users that are interested in BIONIC are comparing it to the libraries listed below
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆49Updated 3 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆47Updated 3 weeks ago
- Knowledge-primed neural networks☆35Updated last year
- Cell2Sentence turns scRNA-seq data into text for LLM training.☆84Updated 5 months ago
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆56Updated 3 years ago
- CellBox: Interpretable Machine Learning for Perturbation Biology☆53Updated last year
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆31Updated this week
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- Single-cell multi-omics integration using Optimal Transport☆41Updated 5 months ago
- repository containing analysis scripts and auxiliary files☆32Updated 4 years ago
- SIMBA: SIngle-cell eMBedding Along with features☆57Updated 3 months ago
- Discovering novel cell types across heterogenous single-cell experiments☆122Updated 2 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- Network-based project to explore gene connectivity through biological scales☆23Updated 3 months ago
- Create cell sentences from sequencing data☆21Updated 6 months ago
- spatial transcriptome, single cell☆67Updated last year
- ☆28Updated last month
- ☆56Updated 5 months ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆29Updated last week
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆24Updated last year
- Python client for the OmniPath web service☆43Updated 7 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆69Updated 7 months ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆36Updated 8 months ago
- ☆73Updated last year
- ☆24Updated 4 years ago
- Multimodal Data (.h5mu) implementation for Python☆87Updated this week
- Regulatory networks with Direct Information in python☆40Updated last year
- ☆114Updated 7 months ago
- ☆34Updated 6 months ago
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆87Updated 3 years ago