Biological Network Integration using Convolutions
☆66Jan 17, 2024Updated 2 years ago
Alternatives and similar repositories for BIONIC
Users that are interested in BIONIC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HiDeF (Hierarchical community Decoding Framework)☆15Jan 30, 2024Updated 2 years ago
- This is the public repository for the EPIC tool.☆19Aug 3, 2022Updated 3 years ago
- Python implementation of Spatial Analysis of Functional Enrichment (SAFE)☆46Aug 26, 2025Updated 10 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆46Sep 20, 2024Updated last year
- A Python FASTA file Parser and Writer.☆17Sep 3, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Issues and pull requests for BiocStyle should go here.☆15Apr 29, 2026Updated 2 months ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆17Jan 7, 2020Updated 6 years ago
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 6 years ago
- The Loss-of-Function ToolKit (LoFTK) allows efficient and automated prediction of LoF variants from both genotyped and sequenced genomes,…☆10Jul 30, 2025Updated 11 months ago
- Kdrew's scripts for handling protein complex map data☆14Jun 17, 2026Updated last month
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆99Jan 14, 2025Updated last year
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆15Apr 12, 2023Updated 3 years ago
- A simple semantic search engine for scientific papers.☆28Sep 14, 2023Updated 2 years ago
- ☆16Jun 5, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CliXO algorithm re-implemented☆16Nov 9, 2021Updated 4 years ago
- Build project for all CEDAR Java repositories☆12Jun 20, 2026Updated last month
- HuBMAP Data Portal front end☆13Updated this week
- Network Reverse Engineering through AP inference of Mutual Information☆89Mar 6, 2023Updated 3 years ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆21Jul 13, 2026Updated last week
- A Python package for gene network analysis☆33Jun 22, 2022Updated 4 years ago
- GeneMANIA helps you predict the function of your favourite genes and gene sets.☆45Sep 29, 2025Updated 9 months ago
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆55Jun 15, 2021Updated 5 years ago
- ☆29Feb 23, 2026Updated 4 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Manubot for white paper☆13Sep 29, 2020Updated 5 years ago
- R package for gene selection using k-NN graphs.☆14Jun 12, 2023Updated 3 years ago
- gSparse: C++ Library for Graph Sparsification☆12Apr 25, 2020Updated 6 years ago
- MATLAB implementation of Gene Set Enrichment Analysis (GSEA) method for finding pathways which can show more complex relation between cha…☆10Sep 7, 2022Updated 3 years ago
- Bam to Pandas DataFrame, quickly☆13May 10, 2025Updated last year
- Cytoscape 3 implementation bundles.☆43Updated this week
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆183Feb 25, 2025Updated last year
- ☆23Mar 20, 2023Updated 3 years ago
- Feature selection for preserving biological trajectories in single-cell data☆22Jun 24, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Benchmarking gene embeddings on single, paired, and gene set tasks☆21Nov 29, 2025Updated 7 months ago
- The implementation of paper "HPOFiller: identifying missing protein-phenotype associations by graph convolutional network".☆12Dec 24, 2020Updated 5 years ago
- k-Nearest Neighbor Information Estimator☆26Jan 7, 2019Updated 7 years ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Apr 3, 2024Updated 2 years ago
- cEll tyPe enrIChment☆17Dec 11, 2022Updated 3 years ago
- TOP results by CONfident efFECT Sizes.☆15Dec 9, 2024Updated last year
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆45Oct 20, 2025Updated 9 months ago