Biological Network Integration using Convolutions
☆64Jan 17, 2024Updated 2 years ago
Alternatives and similar repositories for BIONIC
Users that are interested in BIONIC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HiDeF (Hierarchical community Decoding Framework)☆15Jan 30, 2024Updated 2 years ago
- This is the public repository for the EPIC tool.☆19Aug 3, 2022Updated 3 years ago
- Python implementation of Spatial Analysis of Functional Enrichment (SAFE)☆46Aug 26, 2025Updated 7 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆45Sep 20, 2024Updated last year
- A Python FASTA file Parser and Writer.☆17Sep 3, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Issues and pull requests for BiocStyle should go here.☆14Oct 30, 2025Updated 4 months ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆17Jan 7, 2020Updated 6 years ago
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 5 years ago
- Kdrew's scripts for handling protein complex map data☆14Jun 12, 2025Updated 9 months ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Apr 12, 2023Updated 2 years ago
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆99Jan 14, 2025Updated last year
- A simple semantic search engine for scientific papers.☆28Sep 14, 2023Updated 2 years ago
- CliXO algorithm re-implemented☆16Nov 9, 2021Updated 4 years ago
- ☆16Jun 5, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Build project for all CEDAR Java repositories☆12Oct 20, 2025Updated 5 months ago
- A Python package for gene network analysis☆32Jun 22, 2022Updated 3 years ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Mar 16, 2026Updated last week
- Network Reverse Engineering through AP inference of Mutual Information☆88Mar 6, 2023Updated 3 years ago
- ☆26Feb 23, 2026Updated last month
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆55Jun 15, 2021Updated 4 years ago
- GeneMANIA helps you predict the function of your favourite genes and gene sets.☆45Sep 29, 2025Updated 5 months ago
- Feature selection for preserving biological trajectories in single-cell data☆21May 29, 2025Updated 9 months ago
- HuBMAP Data Portal front end☆13Mar 20, 2026Updated last week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- R package for gene selection using k-NN graphs.☆13Jun 12, 2023Updated 2 years ago
- Bam to Pandas DataFrame, quickly☆13May 10, 2025Updated 10 months ago
- gSparse: C++ Library for Graph Sparsification☆12Apr 25, 2020Updated 5 years ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆170Feb 25, 2025Updated last year
- ☆23Mar 20, 2023Updated 3 years ago
- TOP results by CONfident efFECT Sizes.☆15Dec 9, 2024Updated last year
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆45Oct 20, 2025Updated 5 months ago
- MATLAB implementation of Gene Set Enrichment Analysis (GSEA) method for finding pathways which can show more complex relation between cha…☆10Sep 7, 2022Updated 3 years ago
- ☆12Feb 12, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Jul 10, 2024Updated last year
- ☆10Aug 29, 2023Updated 2 years ago
- k-Nearest Neighbor Information Estimator☆26Jan 7, 2019Updated 7 years ago
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- ☆12Jul 13, 2018Updated 7 years ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆111Aug 13, 2020Updated 5 years ago
- A multi-hop Q/A architecture based on transformers and GCNs.☆16Aug 12, 2019Updated 6 years ago