bowang-lab / BIONICLinks
Biological Network Integration using Convolutions
☆64Updated 2 years ago
Alternatives and similar repositories for BIONIC
Users that are interested in BIONIC are comparing it to the libraries listed below
Sorting:
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆53Updated 6 months ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆52Updated 4 years ago
- repository containing analysis scripts and auxiliary files☆37Updated 5 years ago
- ☆74Updated 2 weeks ago
- ☆100Updated 3 months ago
- CellBox: Interpretable Machine Learning for Perturbation Biology☆56Updated 2 years ago
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆22Updated 3 weeks ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆157Updated 2 weeks ago
- Discovering novel cell types across heterogenous single-cell experiments☆123Updated 3 years ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆43Updated last year
- SIMBA: SIngle-cell eMBedding Along with features☆66Updated last year
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆89Updated 4 years ago
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆55Updated 4 years ago
- Single-cell multi-omics integration using Optimal Transport☆50Updated 5 months ago
- CMap Notebooks for LINCS 2020 Workshop☆49Updated 4 years ago
- ☆19Updated 2 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆51Updated 2 years ago
- Prize-Collecting Steiner Forests for Interactomes☆63Updated last year
- Diffusion model for gene regulatory network inference.☆26Updated 2 weeks ago
- Unified knowledge-driven network inference from omics data☆91Updated this week
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆59Updated 8 months ago
- ☆156Updated last year
- ☆90Updated last year
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆61Updated 3 weeks ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆77Updated 2 weeks ago
- ☆33Updated 5 years ago
- ☆90Updated 2 years ago
- ☆38Updated last month