Alternatives and similar repositories for BioinfinvRepro

Users that are interested in BioinfinvRepro are comparing it to the libraries listed below

• AliciaMstt / TallerBioinf
  Taller práctico de bioinformática Posgrado en Ciencias Biológicas UNAM
  ☆17Updated 4 years ago
• u-genoma / BioinfinvRepro
  Curso de introducción a la bioinformática e investigación reproducible
  ☆30Updated last week
• songweizhi / Tax4Fun2_short_tutorial
  A short tutorial for Tax4Fun2
  ☆22Updated last year
• edgardomortiz / vcf2phylip
  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
  ☆321Updated 2 years ago
• simonhmartin / genomics_general
  General tools for genomic analyses.
  ☆378Updated 8 months ago
• lafabi / Genobiostoic
  Taller para estudiantes de pregrado o postgrado cuyo objetivo principal o secundario involucre estudios genómicos
  ☆28Updated last year
• marbits-icm / marbits-public
  ☆17Updated 5 months ago
• sanger-pathogens / Roary
  Rapid large-scale prokaryote pan genome analysis
  ☆358Updated 2 weeks ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆334Updated 2 months ago
• jodyphelan / genomics_course
  ☆12Updated 8 months ago
• mmatschiner / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆393Updated 2 years ago
• nickjcroucher / gubbins
  Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
  ☆207Updated 2 months ago
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆396Updated 5 months ago
• smirarab / ASTRAL
  Accurate Species TRee ALgorithm
  ☆268Updated last year
• jtlovell / GENESPACE
  ☆222Updated 9 months ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆329Updated 7 months ago
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆148Updated last week
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆357Updated 3 months ago
• labgem / PPanGGOLiN
  Build a partitioned pangenome graph from microbial genomes
  ☆285Updated 3 weeks ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆366Updated 4 months ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆377Updated 2 months ago
• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆253Updated 3 years ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆243Updated 4 years ago
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆261Updated 2 years ago
• gtonkinhill / panaroo
  An updated pipeline for pangenome investigation
  ☆328Updated 8 months ago
• nf-core / mag
  Assembly and binning of metagenomes
  ☆251Updated this week
• tseemann / abricate
  Mass screening of contigs for antimicrobial and virulence genes
  ☆450Updated last year
• Kinggerm / GetOrganelle
  Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
  ☆355Updated 9 months ago
• ANGSD / angsd
  Program for analysing NGS data.
  ☆248Updated 8 months ago
• linzhi2013 / MitoZ
  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
  ☆133Updated last year