justincbagley / piranhaLinks
Scripts for file processing and analysis in phylogenetics and phylogeography
☆13Updated 4 years ago
Alternatives and similar repositories for piranha
Users that are interested in piranha are comparing it to the libraries listed below
Sorting:
- A massively parallel tool for model selection and tree inference on thousands of genes☆50Updated last year
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 4 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 4 years ago
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Updated 5 years ago
- ☆14Updated last year
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated last month
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 5 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated 2 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆21Updated 3 years ago
- ☆40Updated last year
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- Automated de novo assembly of whole chloroplast genomes.☆46Updated 9 months ago
- ☆22Updated 11 years ago
- mtGrasp: de novo reference-grade mitochondrial genome assembly and standardization☆17Updated 4 months ago
- ☆18Updated 4 years ago
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆21Updated 2 years ago
- ☆32Updated 4 years ago
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆15Updated 8 months ago
- Tutorial about R package PopGenome☆41Updated 6 years ago
- Quartet Sampling method for phylogenetic branch support evaluation☆18Updated last year
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- ☆26Updated 4 years ago
- Mobile Genetic Elements Retrieving Tool☆15Updated last month
- Likelihood-based Selective Sweep Detection☆38Updated last year
- A package for population structure inference from RAD-seq data☆31Updated 4 years ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 9 months ago