Cibiv / Teaser
A tool to benchmark mappers and different parameters within minutes
☆43Updated 5 years ago
Alternatives and similar repositories for Teaser:
Users that are interested in Teaser are comparing it to the libraries listed below
- An awk-like VCF parser☆56Updated last year
- High-performance error correction for Illumina resequencing data☆69Updated 8 years ago
- ☆78Updated 11 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆76Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- Structural Variant Index☆72Updated 3 months ago
- Linked-Read Alignment Tool☆27Updated 5 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- UCSC Nanopore☆43Updated 5 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Read visualizer for structural variants☆82Updated 6 years ago
- Maximum likelihood demultiplexing☆46Updated last month
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 8 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆52Updated 7 years ago
- The integrated pipeline for Indel detection☆17Updated 6 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 5 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆27Updated 4 years ago