c-guzman / cipher-workflow-platformLinks
A data processing platform for ChIP-seq, RNA-seq, MNase-seq, DNase-seq, ATAC-seq and GRO-seq datasets. Please ignore information on cipher.readthedocs.io, it is currently out of date. Follow information in README.
☆19Updated 7 years ago
Alternatives and similar repositories for cipher-workflow-platform
Users that are interested in cipher-workflow-platform are comparing it to the libraries listed below
Sorting:
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- a set of NGS pipelines☆24Updated last week
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Exon-exon splice junctions across SRA☆40Updated 3 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- Personal diploid genome creation and coordinate conversion☆26Updated 2 months ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Genomic Association Tester☆31Updated 2 years ago
- RNAseq analysis pipeline☆26Updated 2 years ago
- ☆18Updated 6 years ago
- ☆21Updated last year
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- ☆25Updated 7 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 11 months ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 7 years ago
- a Shiny/R application to view and annotate copy number variations☆27Updated 2 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated 8 months ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- ☆51Updated 5 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Tools to process LIANTI sequence data☆23Updated 6 years ago
- chia pet analysis software☆25Updated 6 years ago