A data processing platform for ChIP-seq, RNA-seq, MNase-seq, DNase-seq, ATAC-seq and GRO-seq datasets. Please ignore information on cipher.readthedocs.io, it is currently out of date. Follow information in README.
☆19Dec 22, 2017Updated 8 years ago
Alternatives and similar repositories for cipher-workflow-platform
Users that are interested in cipher-workflow-platform are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DEPRECIATED! Please use nf-core/tools instead☆19Aug 8, 2018Updated 8 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 3 years ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆12Sep 28, 2018Updated 8 years ago
- Mutational Signature Comprehensive Analysis Toolkit☆16Sep 27, 2026Updated last month
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool to benchmark mappers and different parameters within minutes☆45Jul 2, 2019Updated 7 years ago
- DMRs detection, annotation and analysis☆10Jan 19, 2026Updated 9 months ago
- localised duplicate detection on patterned flow cells☆10Feb 27, 2019Updated 7 years ago
- Generate and process BAM files from Illumina sequencing instrument files☆23Feb 25, 2016Updated 10 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 11 years ago
- Metabase Import Export tool☆19Jan 6, 2023Updated 3 years ago
- ☆21Jul 3, 2019Updated 7 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Jun 25, 2019Updated 7 years ago
- A crate for working with the Task Execution Service (TES) specification.☆13Oct 1, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Mar 30, 2024Updated 2 years ago
- A software package for detection of copy number alterations from tumor samples☆12May 8, 2015Updated 11 years ago
- This pipeline has moved! Please see:☆11Mar 12, 2018Updated 8 years ago
- A template for Play Framework & Yeoman hybrid project without dependency on custom sbt plugins.☆12Oct 23, 2016Updated 10 years ago
- Makes distinct TSS of each gene from a Gencode annotation☆10Oct 19, 2016Updated 10 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37May 18, 2022Updated 4 years ago
- IPAW: a Nextflow workflow for proteogenomics☆29Aug 8, 2024Updated 2 years ago
- tRNA Analysis of eXpression☆15Feb 13, 2025Updated last year
- ☆14Nov 11, 2022Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A collection of modules and sub-workflows for Nextflow☆29Feb 13, 2026Updated 8 months ago
- Kraken2 Server☆23Nov 24, 2025Updated 11 months ago
- A repository template for Scala development in Codespaces☆13Oct 20, 2024Updated 2 years ago
- Notes and code for learning Random Forests☆13Nov 17, 2022Updated 3 years ago
- A Full Stack application built with Kotlin, Spring Boot 2 and Angular 10. You can run this project like a standard Spring Boot and Angula…☆10Jun 14, 2023Updated 3 years ago
- Create modular models. Quickly prototype models whose input includes (multiple) time series data. Create pieces of model use cases separa…☆12Nov 1, 2019Updated 6 years ago
- Some sleuth walkthroughs to help you get started☆10Jul 26, 2018Updated 8 years ago
- Analysis and Visualization of Ribosome Profiling Data☆12Dec 14, 2019Updated 6 years ago
- Workshop content for http://dib-training.readthedocs.org/en/pub/2016-01-13-adv-beg-shell.html☆15Feb 23, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast and scalable inference for single-cell differential gene expression of multiple patients☆15Jul 3, 2026Updated 3 months ago
- Paint genomes with taxa-specific k-mer probabilities☆16Apr 4, 2022Updated 4 years ago
- Demonstrating best practices for bioinformatics command line tools☆24Jun 2, 2026Updated 4 months ago
- PHi-C: deciphering Hi-C data into polymer dynamics☆13Aug 12, 2020Updated 6 years ago
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- Short idioms and patterns for transforming, merging and managing files and channels in Nextflow.☆17Jul 27, 2025Updated last year
- stock predictor with random forest tree☆12Nov 6, 2014Updated 11 years ago