c-guzman / cipher-workflow-platformLinks
A data processing platform for ChIP-seq, RNA-seq, MNase-seq, DNase-seq, ATAC-seq and GRO-seq datasets. Please ignore information on cipher.readthedocs.io, it is currently out of date. Follow information in README.
☆19Updated 7 years ago
Alternatives and similar repositories for cipher-workflow-platform
Users that are interested in cipher-workflow-platform are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- a set of NGS pipelines☆24Updated this week
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last month
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- DriverPower☆26Updated 5 months ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated 9 months ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 10 months ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21Updated 8 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated last year
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Updated 8 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated 2 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- chia pet analysis software☆25Updated 6 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Repository for the Anczukow-Lab splicing pipeline☆16Updated 3 months ago
- RNAseq analysis pipeline☆26Updated 3 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago