slzhao / QC3Links
QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.
☆32Updated 9 years ago
Alternatives and similar repositories for QC3
Users that are interested in QC3 are comparing it to the libraries listed below
Sorting:
- An awk-like VCF parser☆56Updated last year
- ☆78Updated 11 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆78Updated last year
- ☆46Updated 5 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- QDNAseq package for Bioconductor☆50Updated 11 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 8 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 4 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆22Updated 2 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Updated 2 years ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- Genomic Association Tester☆31Updated 2 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- ☆39Updated last year