QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.
☆32May 31, 2016Updated 9 years ago
Alternatives and similar repositories for QC3
Users that are interested in QC3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Assembly Based ReAligner☆75May 24, 2018Updated 8 years ago
- wgs_pipeline☆18Dec 3, 2013Updated 12 years ago
- Applying IDR analysis to Homer peaks.☆15May 8, 2020Updated 6 years ago
- Download binary executables and sample data here:☆18Oct 28, 2016Updated 9 years ago
- WALT is a read mapping program for bisulfite sequencing DNA methylation studies.☆17Aug 23, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Dec 7, 2017Updated 8 years ago
- Genetics training camp☆21Sep 8, 2020Updated 5 years ago
- Targeted Amplicon Bisulfite Sequencing Analysis Tool☆11May 8, 2019Updated 7 years ago
- Devel repository for bsseq☆38Feb 6, 2026Updated 3 months ago
- Mutation Spectra Analysis☆10Mar 15, 2018Updated 8 years ago
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 9 months ago
- PharmGKB NGS Pipeline☆19Oct 2, 2018Updated 7 years ago
- Virtual Pharmacist is a web tool that interprets personal genome for the impact of genetic variation on drug response. It can take varian…☆13Nov 16, 2015Updated 10 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- Web-based database system for flow cell management (incl. REST API)☆16Mar 7, 2024Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37May 18, 2022Updated 4 years ago
- Use gene expression to predict phenotype sample information☆19Feb 13, 2018Updated 8 years ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Nov 27, 2017Updated 8 years ago
- ABRA2☆97Dec 2, 2022Updated 3 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Sep 16, 2021Updated 4 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated this week
- synchronize your wordpress or github to hugo website automaticlly☆15Nov 2, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 13 years ago
- Fork of the canopy clustering algorithm of Nielsen et al.☆11Sep 9, 2016Updated 9 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 7 years ago
- ☆22Dec 17, 2020Updated 5 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Jul 6, 2021Updated 4 years ago
- Annotation and Prediction of Oncogenic Gene Fusions in RNAseq☆12Feb 20, 2016Updated 10 years ago
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Mar 14, 2019Updated 7 years ago
- Multi-sample somatic variant caller☆52Jan 27, 2022Updated 4 years ago
- A flexible framework for rapid genome analysis and interpretation☆319Oct 18, 2022Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A light weight shiny based web app to access TCGA data☆15Apr 29, 2015Updated 11 years ago
- A fast and efficient short read mapper☆13Nov 7, 2021Updated 4 years ago
- Materials for http://dib-training.readthedocs.org/en/pub/2015-11-09-docker.html☆14May 29, 2017Updated 8 years ago
- Source code for ScanGEO Shiny App☆15Apr 18, 2022Updated 4 years ago
- Mitochondrial Solar Plot☆25Feb 25, 2017Updated 9 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆10Apr 16, 2026Updated last month
- A program for summarising CpG methylation patterns☆20Sep 9, 2016Updated 9 years ago