soedinglab / BaMMmotifLinks
Bayesian Markov Model motif discovery - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.
☆20Updated 7 years ago
Alternatives and similar repositories for BaMMmotif
Users that are interested in BaMMmotif are comparing it to the libraries listed below
Sorting:
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- gia: Genomic Interval Arithmetic☆64Updated last year
- sfasta☆35Updated 4 months ago
- a string to graph aligner☆41Updated 9 years ago
- Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:☆23Updated 6 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Single-Cell RNA-seq pseudo-aligner☆51Updated last year
- Tandem Repeat Annotation Library☆25Updated 2 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 8 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- A Demultiplexing Tool for Illumina Sequencers☆10Updated 8 years ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆34Updated last year
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 7 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- simple and not slow ORF caller☆21Updated 7 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- GRAph-based Finding of Individual Motif Occurrences☆31Updated last year
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 2 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Bioinformatics Open Source Sequence machine☆32Updated 2 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- Python bindings to minimap2☆16Updated 8 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Population Reference Graphs for the HLA and MHC.☆35Updated 6 years ago
- A Python library for reading and writing PacBio® data files☆41Updated 6 months ago