biocore-ntnu / epic
(DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
☆31Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for epic
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Genomic Association Tester☆29Updated last year
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆39Updated 3 years ago
- ☆24Updated 5 months ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆33Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆26Updated 2 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆62Updated 4 years ago
- IDR☆30Updated last year
- An awk-like VCF parser☆54Updated 10 months ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Updated 7 years ago
- chia pet analysis software☆25Updated 5 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆44Updated 5 years ago
- BigWig and BAM utilities☆92Updated 7 months ago
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆23Updated 8 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- ☆30Updated 6 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- ☆78Updated 10 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆43Updated 2 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 5 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- A preprocessing and QC pipeline for HiChIP data☆33Updated 2 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆32Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆31Updated 8 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago