biocore-ntnu / epicLinks
(DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
☆31Updated 6 years ago
Alternatives and similar repositories for epic
Users that are interested in epic are comparing it to the libraries listed below
Sorting:
- ☆78Updated 11 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- BigWig and BAM utilities☆97Updated last year
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Genomic Association Tester☆32Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- An awk-like VCF parser☆56Updated last year
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- ☆26Updated 4 months ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Fast fusion detection using kallisto☆79Updated 3 months ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 3 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 6 months ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆54Updated last year
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 2 months ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 4 months ago
- conda recipes for genomic data☆84Updated 4 years ago