karmel / homer-idr
Applying IDR analysis to Homer peaks.
☆15Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for homer-idr
- Chromatin segmentation in R☆19Updated 6 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- R package for Methylation-based Inference of Regulatory Activity☆11Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- ☆12Updated 4 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆14Updated 10 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆10Updated 5 years ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Updated 6 years ago
- JAMM Peak Finder for Sequencing Datasets☆28Updated 4 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 5 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆39Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 5 months ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 5 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 5 months ago
- Differential ATAC-seq toolkit☆27Updated 11 months ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆27Updated 4 years ago
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Updated 6 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 3 months ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆16Updated 4 years ago