Alternatives and similar repositories for GenOO

Users that are interested in GenOO are comparing it to the libraries listed below

• wyim-pgl / DCBLAST
  Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools
  ☆12Updated 5 years ago
• cjfields / bioperl6
  reimplementation of BioPerl classes in Raku (e.g. the language formerly known as Perl6)
  ☆48Updated 6 years ago
• Ensembl / Bio-DB-HTS
  Git repo for Bio::HTS module on CPAN, providing Perl links into HTSlib
  ☆24Updated 4 months ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆33Updated last year
• jingquanlim / batalign
  ☆12Updated 9 years ago
• NCBI-Codeathons / SWIGG
  A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers
  ☆22Updated 5 years ago
• galantelab / sandy
  A straightforward and complete next-generation sequencing read simulator
  ☆21Updated last year
• bioperl / bioperl.github.io
  The BioPerl Web site: http://bioperl.org
  ☆14Updated 5 years ago
• your-highness / normR
  Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.
  ☆11Updated 3 years ago
• indraniel / fqgrep
  An approximate sequence pattern matcher for FASTQ/FASTA files.
  ☆30Updated 9 years ago
• mjsull / HapFlow
  Visualise interstrain recombination from environmental samples.
  ☆26Updated 6 years ago
• Ensembl / ensembl-variation
  The Ensembl Variation Perl API and SQL schema
  ☆28Updated 2 weeks ago
• Geo-omics / scripts
  Metagenomic pipeline and other general scripts used in the lab.
  ☆35Updated 3 months ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆84Updated 7 years ago
• bioperl / bioperl-run
  BioPerl wrappers
  ☆36Updated 4 years ago
• sentisci / fheatmap
  R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…
  ☆11Updated 9 years ago
• kyclark / metagenomics-book
  Example code from metagenomics book (https://www.gitbook.com/book/kyclark/metagenomics/details)
  ☆16Updated 6 years ago
• quinlan-lab / vcftidy
  normalize, left-align, trim, validate and clean VCF files
  ☆20Updated 9 years ago
• tanghaibao / trimReads
  Utility programs to trim or sort Illumina reads with adapter sequences
  ☆15Updated 11 years ago
• richarddurbin / hash10x
  a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly
  ☆15Updated 5 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• tlawrence3 / FAST
  FAST: Fast Analysis of Sequences Toolbox
  ☆31Updated 5 years ago
• BenLangmead / qtip
  Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
  ☆25Updated 5 years ago
• ernfrid / diagnose_dups
  A tool to examine duplicate read characteristics in a BAM file
  ☆12Updated 7 years ago
• optimuscoprime / autoadapt
  Automatic quality control for FASTQ sequencing files
  ☆13Updated 7 years ago
• DecodeGenetics / BamHash
  ☆37Updated 4 years ago
• hitbc / LAMSA
  Long Approximate Matches-based Split Aligner
  ☆13Updated 8 years ago
• arq5x / filo
  Useful FILe and stream Operations
  ☆45Updated 9 years ago
• opencb / hpg-aligner
  HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
  ☆34Updated 7 years ago
• MWSchmid / Rcount
  Rcount: simple and flexible RNA-Seq read counting
  ☆12Updated 2 years ago