genoo / GenOOLinks
A Modern Perl Framework for High Throughput Sequencing analysis
☆17Updated 5 years ago
Alternatives and similar repositories for GenOO
Users that are interested in GenOO are comparing it to the libraries listed below
Sorting:
- Git repo for Bio::HTS module on CPAN, providing Perl links into HTSlib☆25Updated last year
- The Ensembl Compara Perl API and SQL schema☆55Updated last week
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 6 years ago
- Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools☆11Updated 5 years ago
- The Ensembl Variation Perl API and SQL schema☆30Updated 3 weeks ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆68Updated 11 years ago
- Tools for bam file processing☆55Updated 10 years ago
- 10x Genomics Reads Simulator☆46Updated 2 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 8 years ago
- a wee tool for random access into BGZF files.☆86Updated 7 years ago
- a pileup library that embraces the huge☆43Updated 5 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Useful small programs☆28Updated 13 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 9 years ago
- Fast & accurate alignment of barcoded short-reads☆32Updated 2 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Updated 3 years ago
- C++ package for analysing CRISPR off targets☆21Updated 4 years ago
- ☆36Updated 5 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆73Updated 9 months ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Updated 2 years ago
- Lightweight resources assembly algorithm☆19Updated 8 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Updated 4 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 6 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆86Updated 11 months ago
- tools for error correction and working with long read data☆44Updated 11 years ago
- Algorithms to compute DNA complexity☆35Updated 3 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 3 years ago
- Assembly Based ReAligner☆74Updated 7 years ago