PharmGKB NGS Pipeline
☆19Oct 2, 2018Updated 7 years ago
Alternatives and similar repositories for pgkb-ngs-pipeline
Users that are interested in pgkb-ngs-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The Pharmacogenomic Clinical Annotation Tool☆166Feb 25, 2026Updated last month
- A bioinformatics pipeline to analyze mtDNA from NGS data☆98Mar 5, 2024Updated 2 years ago
- A tool to genotype CYP2D6 with WGS data☆55Oct 14, 2023Updated 2 years ago
- Human mitochondrial variants annotation using HmtVar.☆18Oct 16, 2023Updated 2 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 4 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- (current) A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing …☆23Updated this week
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆16Dec 28, 2022Updated 3 years ago
- Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensemb…☆10May 7, 2017Updated 8 years ago
- ☆11Jul 13, 2018Updated 7 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆42Aug 17, 2021Updated 4 years ago
- 肿瘤突变负荷学习笔记（tumor mutation burden）☆16Dec 10, 2019Updated 6 years ago
- ☆13Oct 14, 2017Updated 8 years ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An R package for Standardized Summary, Annotation, Comparison, and Visualization of CNV, CNVR and ROH☆15Oct 17, 2021Updated 4 years ago
- TCGA data acquisition and processing for Project Cognoma☆23Apr 19, 2018Updated 7 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32May 31, 2016Updated 9 years ago
- A repository of notes, code, slides, and resources for the MetaPathways tutorial being held February 2014 at UBC.☆18Mar 9, 2015Updated 11 years ago
- Tests Allelic Expression data for extreme imbalance w.r.t. population☆11Oct 8, 2021Updated 4 years ago
- Web application for clinical pharmacogenomic interpretation☆10Mar 3, 2017Updated 9 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆78Jun 30, 2025Updated 9 months ago
- Linear time detection of Identity by Descent☆13Jul 22, 2011Updated 14 years ago
- Command line tools for CMDB varaints browser☆23May 14, 2024Updated last year
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Variant Annotation, Segregation and Exclusion for family or cohort based rare-disease sequencing studies.☆12Jun 2, 2022Updated 3 years ago
- ☆16Apr 10, 2024Updated 2 years ago
- Internationalisation of the HPO content☆19Feb 27, 2023Updated 3 years ago
- DNA methylation-based classification of central nervous system tumours☆10Feb 1, 2023Updated 3 years ago
- ☆28Oct 5, 2018Updated 7 years ago
- mtDNA-Server 2: A web-service and Nextflow pipeline for mitochondrial genomes☆22Nov 13, 2025Updated 5 months ago
- Copy Number Variations (CNV) Simulator☆11Jul 30, 2018Updated 7 years ago
- Sentieon DNAseq☆23Dec 30, 2020Updated 5 years ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆42Sep 8, 2025Updated 7 months ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- 💊🧬 PharMe - Pharmaceutical insights tailored to your personal genome☆23Aug 20, 2025Updated 7 months ago
- Docker Image for Michigan Imputation Server☆18Oct 12, 2021Updated 4 years ago
- Structural Variation breakpoint discovery via adaptive learning☆17Jul 6, 2023Updated 2 years ago
- PGxPOP☆17Jan 25, 2023Updated 3 years ago
- A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline☆207May 28, 2023Updated 2 years ago
- GUI for batch primer design with graphical output for PCR and SNP detection☆17Jun 28, 2018Updated 7 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆73Jun 26, 2023Updated 2 years ago