COV-IRT / SARS-CoV-2_workshop
☆20Updated 3 years ago
Alternatives and similar repositories for SARS-CoV-2_workshop:
Users that are interested in SARS-CoV-2_workshop are comparing it to the libraries listed below
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆23Updated 5 years ago
- Adapters for trimming☆30Updated 6 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- A collection of modules and sub-workflows for Nextflow☆26Updated last week
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 4 months ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆32Updated 8 months ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 5 months ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated 9 months ago
- A series of scripts to automate sequence workflows☆19Updated 6 months ago
- full taxonomer cython repository☆22Updated 5 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆28Updated 8 months ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆20Updated 3 years ago
- detection of duplications and deletions using Python based machine learning techniques☆28Updated 5 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 2 years ago
- Evolutionary Transcriptomics with R☆42Updated this week
- A command line tool to compute mapping statistics from a BAM file☆23Updated 3 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Functions to compare a SV call sets against a truth set.☆29Updated 10 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- The shiny app that accompanies the ngsReports R package☆14Updated 3 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆21Updated 6 months ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago