dariober / SICERpy
Python wrapper around the popular ChIP-Seq peak caller SICER
☆15Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for SICERpy
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last year
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 6 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Chromatin segmentation in R☆19Updated 6 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 5 months ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆39Updated 3 years ago
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 5 months ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- TSIS: an R package to infer time-series isoform switch of alternative splicing☆3Updated last year
- Exon-exon splice junctions across SRA☆39Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated 11 months ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Download binary executables and sample data here:☆18Updated 8 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- A versatile and efficient RNA-Seq read counting tool☆16Updated 8 years ago
- Applying IDR analysis to Homer peaks.☆15Updated 4 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- RNA-Seq pipeline☆34Updated 9 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 8 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago