Mapped QC analysis program
☆44May 16, 2018Updated 8 years ago
Alternatives and similar repositories for BamQC
Users that are interested in BamQC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 7 years ago
- Determine the biological sex of a human whole-genome BAM file☆16Feb 10, 2019Updated 7 years ago
- A collection of tools to work with Illumina's basespace☆13Apr 10, 2019Updated 7 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 4 months ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Dec 7, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Rcount: simple and flexible RNA-Seq read counting☆12May 19, 2022Updated 4 years ago
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Feb 7, 2026Updated 7 months ago
- Predicting oncogenic potential of gene fusions☆12Feb 13, 2016Updated 10 years ago
- SeqMonk NGS visualisation and analysis tool☆51Mar 31, 2026Updated 5 months ago
- Applying IDR analysis to Homer peaks.☆18May 8, 2020Updated 6 years ago
- A tool to benchmark mappers and different parameters within minutes☆45Jul 2, 2019Updated 7 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆99Apr 9, 2023Updated 3 years ago
- An application to remove PCR duplicates from high throughput sequencing runs.☆11Apr 22, 2018Updated 8 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Jun 26, 2017Updated 9 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Web application to collect and visualise data across multiple MultiQC runs.☆96Dec 13, 2024Updated last year
- A tutorial for learning de novo assembly☆33Dec 8, 2011Updated 14 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆28Sep 9, 2026Updated 2 weeks ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆36Dec 20, 2010Updated 15 years ago
- GEMTools main repository☆17Jun 21, 2022Updated 4 years ago
- GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF☆19Oct 30, 2020Updated 5 years ago
- Deduplication for cfDNA sequencing data☆11Jul 5, 2017Updated 9 years ago
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Mar 14, 2019Updated 7 years ago
- This project contains simple methods to measure sample relatedness and identify potential swaps and contamination☆10Jan 8, 2016Updated 10 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Apr 19, 2016Updated 10 years ago
- A fast and efficient short read mapper☆13Nov 7, 2021Updated 4 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- Practical R Packaging with Docker☆40Sep 19, 2025Updated last year
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 4 years ago
- Mutation Spectra Analysis☆10Mar 15, 2018Updated 8 years ago
- Differential expression and allelic analysis, nonparametric statistics☆32Jan 3, 2025Updated last year
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Feb 17, 2019Updated 7 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆26Dec 11, 2017Updated 8 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Tools for bam file processing☆56Apr 20, 2015Updated 11 years ago
- ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps☆23Oct 12, 2017Updated 8 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Jan 19, 2021Updated 5 years ago
- Chromatin domains bursting with flavor☆12Dec 29, 2019Updated 6 years ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 10 years ago
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆17Aug 9, 2018Updated 8 years ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆20Jul 24, 2026Updated 2 months ago