SouthGreenPlatform / TOGGLE
Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis
☆18Updated 2 years ago
Alternatives and similar repositories for TOGGLE:
Users that are interested in TOGGLE are comparing it to the libraries listed below
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 8 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 6 months ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- NExt generation Analysis Toolbox☆14Updated 9 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 7 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- The gkno launcher for executing tools or pipelines☆32Updated 8 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF☆20Updated 4 years ago
- Genomic plot in trellis layout☆39Updated 11 months ago
- Interactive table from gemini output☆10Updated 5 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Q ChIP-seq peak caller☆18Updated 6 months ago
- Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead☆33Updated 7 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 5 years ago
- An interactive Shiny web application for genomic interval enrichment analysis using LOLA.☆16Updated 2 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated 3 years ago
- ☆9Updated 8 years ago
- ☆20Updated 7 years ago
- Quick Read Quality Control☆20Updated last year
- fast webservices based query tool for large sets of genomic features☆25Updated 2 years ago
- What's The Function of these genes?☆22Updated 7 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated last year
- Tools for bam file processing☆55Updated 9 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 4 years ago