SouthGreenPlatform / TOGGLE
Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis
☆18Updated 2 years ago
Alternatives and similar repositories for TOGGLE:
Users that are interested in TOGGLE are comparing it to the libraries listed below
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 8 years ago
- Docker images of bioinformatics software☆21Updated 7 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 7 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- A talk on Makesfiles in bioinformatics☆26Updated 11 years ago
- NExt generation Analysis Toolbox☆14Updated 9 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 8 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 11 years ago
- Genomic plot in trellis layout☆39Updated last year
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- ☆23Updated 5 years ago
- Tools for bam file processing☆55Updated 10 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆31Updated 2 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- DEPRECIATED! Please use nf-core/tools instead☆19Updated 6 years ago
- a Shiny/R application to view and annotate copy number variations☆27Updated 2 years ago
- Interactive table from gemini output☆10Updated 6 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆25Updated 4 years ago
- Quick Read Quality Control☆20Updated 2 years ago
- CRAM format specification and java API for read data.☆59Updated 6 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- Ebola virus surveillance☆16Updated 8 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆22Updated 6 years ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆28Updated last week
- Allele frequency filtering for Mendelian variant discovery☆17Updated 8 years ago