SouthGreenPlatform / TOGGLELinks
Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis
☆18Updated 2 years ago
Alternatives and similar repositories for TOGGLE
Users that are interested in TOGGLE are comparing it to the libraries listed below
Sorting:
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆32Updated 2 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 9 years ago
- The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline☆33Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- ☆36Updated 5 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 8 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 9 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆28Updated 3 months ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 4 months ago
- Tools for bam file processing☆55Updated 10 years ago
- Allele frequency filter app☆14Updated 3 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 weeks ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 7 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- A data processing platform for ChIP-seq, RNA-seq, MNase-seq, DNase-seq, ATAC-seq and GRO-seq datasets. Please ignore information on ciphe…☆19Updated 7 years ago