SouthGreenPlatform / TOGGLELinks
Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis
☆18Updated 3 years ago
Alternatives and similar repositories for TOGGLE
Users that are interested in TOGGLE are comparing it to the libraries listed below
Sorting:
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 9 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Allele frequency filter app☆14Updated 3 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Tools for bam file processing☆55Updated 10 years ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆29Updated last month
- fast webservices based query tool for large sets of genomic features☆25Updated 7 months ago
- A web based tool to manage and automate the processing of publicly available datasets.☆39Updated 4 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆32Updated 3 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 3 weeks ago
- ☆36Updated 5 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline☆33Updated 7 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- create a gemini-compatible database from a VCF☆55Updated 4 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago