jason-weirather / AlignQCLinks
Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and rarefraction curve analysis. The most basic analysis only requires a BAM file, and outputs a web browser compatible xhtml to visualize/share/store/extract analysis results.
☆49Updated 7 years ago
Alternatives and similar repositories for AlignQC
Users that are interested in AlignQC are comparing it to the libraries listed below
Sorting:
- ☆81Updated 7 months ago
- UCSC Nanopore☆44Updated 6 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Structural Variants Pipeline for Long Reads☆44Updated 7 years ago
- SV genotyping with long reads☆40Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Structural variant caller☆55Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago
- ☆49Updated last year
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 7 years ago
- ☆36Updated last year
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 9 months ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated last month
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 7 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- ☆79Updated 5 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆38Updated last year
- ☆30Updated 4 years ago
- Long-read splice alignment with high accuracy☆63Updated last year
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- ☆51Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 11 months ago
- Specifications for PacBio® native file formats☆31Updated 11 months ago
- An easy way to run BioNano genomic analysis☆28Updated 4 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆37Updated 4 years ago
- HMM-HDP models for MinION signal alignments☆46Updated 8 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆103Updated 4 years ago