ChiLiubio / file2mecoLinks
Transform files to the microtable object with microeco package
☆28Updated last month
Alternatives and similar repositories for file2meco
Users that are interested in file2meco are comparing it to the libraries listed below
Sorting:
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- R implementation of the LEfSe method☆59Updated 4 months ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 3 months ago
- ☆12Updated 3 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆63Updated 3 years ago
- A microbiome analysis toolkit for R☆24Updated 2 years ago
- ☆41Updated 7 years ago
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆44Updated 2 weeks ago
- SourceTracker2☆80Updated last year
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆45Updated 3 weeks ago
- Speedy versions of phyloseq functions☆47Updated last year
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- ☆20Updated 5 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆119Updated last month
- ☆77Updated last year
- Repo for a Microbiome Protocol☆10Updated 7 years ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆32Updated 6 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆69Updated last year
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- ☆24Updated 5 years ago
- Statistics and visualization for amplicon data☆71Updated 2 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆31Updated last year
- R package for downstream Microbiome analysis☆30Updated 9 months ago
- dada2 formatted nifH database☆12Updated last year