Transform files to the microtable object with microeco package
☆29May 29, 2026Updated 2 months ago
Alternatives and similar repositories for file2meco
Users that are interested in file2meco are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for downstream data analysis of microbiome omics data☆290Jul 28, 2026Updated 3 weeks ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆11Jul 28, 2019Updated 7 years ago
- 🐦 spideog - Command line utility for Kraken2 reports.☆11Nov 30, 2020Updated 5 years ago
- ☆20Nov 11, 2024Updated last year
- functions for analyzing phyloseq data☆28Feb 4, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- workflows for offline analysis of 16S rRNA Nanopore data☆17Jun 13, 2023Updated 3 years ago
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated 2 years ago
- FUNGuild: parsing OTUs into functional guilds☆133Apr 26, 2024Updated 2 years ago
- diversity estimation under ecological networks☆83Jun 16, 2026Updated 2 months ago
- A dynamic database of fungal trait measurements☆89Feb 26, 2020Updated 6 years ago
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 6 months ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆18Jul 31, 2025Updated last year
- http://huttenhower.sph.harvard.edu/waafle☆24Jun 16, 2026Updated 2 months ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆15Nov 24, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆33Jul 14, 2024Updated 2 years ago
- Count Regression for Correlated Observations with the Beta-binomial☆108Nov 13, 2025Updated 9 months ago
- Tools for visualising microbial community amplicon data☆74Nov 3, 2025Updated 9 months ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆20May 26, 2025Updated last year
- ☆52May 29, 2026Updated 2 months ago
- Species richness with high diversity☆68Jun 25, 2026Updated last month
- ☆12May 25, 2025Updated last year
- Microbial ecological network visualization clustering☆154Nov 20, 2025Updated 8 months ago
- Look Up Guild Information for Fungi in R☆26Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Generate Galaxy tool descriptions automatically from QIIME 2 actions.☆20May 15, 2026Updated 3 months ago
- A Toolbox for Manipulating Biological Sequences in R☆26Sep 30, 2025Updated 10 months ago
- Repo for course Tools for complex data analysis☆11Jul 15, 2024Updated 2 years ago
- Bioconductor package to characterize, analyze and integrate exposome with omic and disease data☆20May 11, 2026Updated 3 months ago
- LorMe package for R:Lightening One-code Resolving Microbial Ecology Program☆18Jul 20, 2026Updated 3 weeks ago
- Make phylogenetic trees and lineages from the NCBI Taxonomy database☆14Mar 19, 2023Updated 3 years ago
- Code, unit tests, and tutorials for running PICRUSt2☆396Nov 27, 2025Updated 8 months ago
- Import qiime2 artifacts to R☆185Dec 12, 2024Updated last year
- Various functions for analysis of microbial community data☆48Apr 15, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆118Apr 11, 2023Updated 3 years ago
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆93Oct 9, 2025Updated 10 months ago
- User-Friendly R Package for Supervised Machine Learning Pipelines☆65Aug 10, 2026Updated last week
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆28Feb 6, 2023Updated 3 years ago
- A functional profiler for metagenomes using FracMinHash☆21Apr 20, 2026Updated 3 months ago
- Plot microbiome time series in parallel☆27Nov 7, 2023Updated 2 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆25Jan 24, 2024Updated 2 years ago