ChiLiubio / meconetcompLinks
Compare microbial co-occurrence networks based on the trans_network class of microeco package
☆10Updated 3 weeks ago
Alternatives and similar repositories for meconetcomp
Users that are interested in meconetcomp are comparing it to the libraries listed below
Sorting:
- dada2 formatted nifH database☆11Updated last year
- Utilities for community ecology analysis☆18Updated 4 years ago
- Various functions for analysis of microbial community data☆44Updated 2 years ago
- Dissimilarity Overlap Curve analysis☆11Updated 2 years ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆31Updated 4 months ago
- Look Up Guild Information for Fungi in R☆21Updated 2 months ago
- ☆38Updated last year
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 2 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆30Updated 10 months ago
- R tools for reconstructing metabolisms.☆14Updated last month
- ☆55Updated 2 weeks ago
- ☆15Updated 2 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆16Updated last year
- Speedy versions of phyloseq functions☆48Updated last year
- Code for running analyses carried out in Stegen et al. 2013, ISME☆29Updated 7 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 3 months ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆46Updated 6 months ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- 📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models☆9Updated 3 years ago
- Microbial co-occurrence network inferred from Earth Microbiome Project☆25Updated 5 years ago
- Analysis code for a manuscript on community similarity computation☆14Updated 6 years ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 2 years ago
- Plot microbiome time series in parallel☆26Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 4 months ago
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- Transform files to the microtable object with microeco package☆27Updated 2 months ago
- ☆16Updated this week
- functions for analyzing phyloseq data☆27Updated 4 months ago
- Materials for the STAMPS 2024 course at the MBL in Woods Hole, MA, USA☆11Updated 10 months ago
- ☆14Updated 2 months ago