ChiLiubio / meconetcompLinks
Compare microbial co-occurrence networks based on the trans_network class of microeco package
☆11Updated 2 weeks ago
Alternatives and similar repositories for meconetcomp
Users that are interested in meconetcomp are comparing it to the libraries listed below
Sorting:
- dada2 formatted nifH database☆12Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Various functions for analysis of microbial community data☆46Updated 3 weeks ago
- SourceTracker2☆80Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 4 months ago
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- ☆20Updated 5 years ago
- ☆41Updated last year
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆32Updated last year
- Network construction, analysis, and comparison for microbial compositional data☆171Updated 7 months ago
- A synthesis of bacterial and archaeal phenotypic trait data☆35Updated last year
- ☆39Updated 7 months ago
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆87Updated 3 weeks ago
- Transform files to the microtable object with microeco package☆28Updated 2 months ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆18Updated 2 years ago
- 📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models☆10Updated 4 years ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 3 years ago
- Microbial co-occurrence network inferred from Earth Microbiome Project☆26Updated 5 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- Dissimilarity Overlap Curve analysis☆11Updated 2 years ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆47Updated 11 months ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆47Updated 2 weeks ago
- R implementation of the LEfSe method☆59Updated this week
- Utilities for community ecology analysis☆19Updated 5 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆62Updated 3 years ago
- Look Up Guild Information for Fungi in R☆22Updated 7 months ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆126Updated last month
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- A microbiome analysis toolkit for R☆24Updated 2 years ago