wuaipinglab / sitePathLinks
Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations
☆11Updated 2 months ago
Alternatives and similar repositories for sitePath
Users that are interested in sitePath are comparing it to the libraries listed below
Sorting:
- A Python API for managing genotype-phenotype map data☆12Updated 2 years ago
- software for the analysis and visualization of deep mutational scanning data☆34Updated 3 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- The Dinucleotide Quantification Python Package☆11Updated 3 years ago
- COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …☆17Updated 3 years ago
- Comprehensive Python client for the Uniprot REST API☆52Updated last month
- Open source short linear motif discovery and sequence analysis☆25Updated last year
- Protein Sequence Annotation with Language Models☆24Updated 5 months ago
- antimicrobial peptide prediction in R☆33Updated 11 months ago
- Bayesian enrichment estimation in R☆11Updated last week
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆29Updated 10 months ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆34Updated 2 years ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 5 months ago
- ☆15Updated 9 years ago
- The tRNA adaptation index☆19Updated 6 months ago
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆13Updated 6 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆25Updated 2 years ago
- Sequence analysis library used by Eddy/Rivas lab code☆49Updated 2 months ago
- Deep learning embedding for nucleotide sequences☆19Updated 7 months ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- phylogenetic analyses informed by deep mutational scanning data☆15Updated last year
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆76Updated 3 months ago
- Metagenome analysis using the Kraken software suite☆35Updated 3 years ago
- Tool for deep mutational scanning experiments.☆55Updated 8 months ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆39Updated last week
- autoprot provides standardised, fast, and reliable proteomics data analysis while ensuring a high customisability needed to tailor the an…☆10Updated last week
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆36Updated 2 months ago
- EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence☆32Updated 2 years ago
- Brief tutorial for using Snakemake to create and submit jobs on a HPC cluster.☆14Updated 3 years ago
- DeepECtransformer☆28Updated 2 years ago