Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations
☆11Sep 18, 2025Updated 5 months ago
Alternatives and similar repositories for sitePath
Users that are interested in sitePath are comparing it to the libraries listed below
Sorting:
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Oct 29, 2025Updated 4 months ago
- A Python API for managing genotype-phenotype map data☆12Aug 18, 2023Updated 2 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- Epidemiological modeling framework for pathogen population genetics and evolution.☆18Oct 7, 2024Updated last year
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Oct 27, 2020Updated 5 years ago
- ☆16Aug 17, 2023Updated 2 years ago
- An R package with toolkits for tong's friends☆11Mar 18, 2025Updated 11 months ago
- Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"☆70Oct 11, 2023Updated 2 years ago
- Fast and flexible code for solving the inverse Ising/Potts inference problem☆27May 12, 2023Updated 2 years ago
- An R Package for Multiplex PCR Primer Design and Analysis☆30Jul 12, 2025Updated 7 months ago
- software for the analysis and visualization of deep mutational scanning data☆34Oct 6, 2022Updated 3 years ago
- Flutrack platform gathers flu related tweets from the entire world, with searching tag, words that are influenza synonyms and flu symptom…☆13Apr 22, 2019Updated 6 years ago
- Import script needed to build FluPRINT database from source☆11May 23, 2019Updated 6 years ago
- An interactive shiny app for processing DIA-nn output (filtering, MaxLFQ, Top3, iBAQ, etc.)☆14Feb 4, 2026Updated 3 weeks ago
- An experimental deep learning & genotype network-based system for predicting new influenza protein sequences.☆36Aug 23, 2023Updated 2 years ago
- Code and Data for Advancing real-time infectious disease forecasting using large language models☆52Jun 27, 2025Updated 8 months ago
- BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow☆42Aug 21, 2024Updated last year
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆38Aug 18, 2023Updated 2 years ago
- Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences☆10Feb 26, 2023Updated 3 years ago
- Postprocessing gadgets for output generated by RevBayes☆14Feb 22, 2026Updated last week
- Identification of viral RdRPs in single-cell RNA sequencing data☆13Jul 23, 2025Updated 7 months ago
- Simulate short-reads datasets using probabilistic models☆11Jun 1, 2013Updated 12 years ago
- Python SIR-x model implementation☆10Dec 8, 2022Updated 3 years ago
- Lecture on viral phylodynamics☆11Oct 28, 2021Updated 4 years ago
- Functions for statistical estimation with pooled or grouped binary data☆10Jan 5, 2024Updated 2 years ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- Graphical Representation of Ancestral Sequence Predictions☆12Mar 6, 2023Updated 2 years ago
- R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecula…☆11Feb 19, 2026Updated last week
- Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 2…☆10Jan 12, 2019Updated 7 years ago
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆12Feb 6, 2026Updated 3 weeks ago
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆10Jan 7, 2026Updated last month
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- ☆12Feb 15, 2023Updated 3 years ago
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated 9 months ago
- Automatically exported from code.google.com/p/prottest3☆37Jan 22, 2018Updated 8 years ago
- Alwaysnote is an Evernote clone using vuejs, tailwind css, and FastAPI☆14Jan 4, 2023Updated 3 years ago
- phylogenetic networks using ggplot2 and ggtree☆11Oct 22, 2025Updated 4 months ago
- ☆11May 10, 2025Updated 9 months ago
- Xiangyun's personal website☆11Feb 10, 2026Updated 3 weeks ago