SDTC-CPMed / scDrugPrioView external linksLinks
Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease
☆13Mar 23, 2024Updated last year
Alternatives and similar repositories for scDrugPrio
Users that are interested in scDrugPrio are comparing it to the libraries listed below
Sorting:
- R tools for analysis and visualization of single-cell subclustering data☆17Sep 9, 2025Updated 5 months ago
- ☆11Jul 8, 2024Updated last year
- Code relating to http://dx.doi.org/10.2139/ssrn.4132721☆11Nov 24, 2022Updated 3 years ago
- ☆13Jan 24, 2024Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆31Feb 28, 2022Updated 3 years ago
- scVI extension for unspliced RNA☆16May 18, 2025Updated 8 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆39Aug 10, 2023Updated 2 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆85Mar 20, 2025Updated 10 months ago
- ☆45Jan 11, 2024Updated 2 years ago
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆25Updated this week
- scTM: A package for topic modelling in transcriptomics data☆24May 1, 2024Updated last year
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Aug 29, 2023Updated 2 years ago
- Genome-scale metabolic model of Methylococcus capsulatus.☆12Apr 12, 2019Updated 6 years ago
- Profile purification of single-cell spatial transcriptomics data☆30Nov 13, 2025Updated 3 months ago
- Gene group activity utility functions for Scanpy☆100Dec 21, 2024Updated last year
- ☆21Jul 7, 2025Updated 7 months ago
- ☆25Jan 9, 2024Updated 2 years ago
- ☆25Oct 22, 2025Updated 3 months ago
- Integration of gut cell atlases☆34Oct 29, 2025Updated 3 months ago
- R package☆27Aug 16, 2020Updated 5 years ago
- SIMBA: SIngle-cell eMBedding Along with features☆66Oct 16, 2024Updated last year
- Individual level Differential Expression Analysis for Single cells☆26Dec 24, 2022Updated 3 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Sep 20, 2022Updated 3 years ago
- Hotspot cluster distance analysis in spatial transcriptomic data☆35Feb 10, 2025Updated last year
- Bayesian model for RNA velocity estimation of periodic manifolds☆34Jun 25, 2024Updated last year
- cell type specific, trait-associated gene regulation☆29Mar 31, 2025Updated 10 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- ☆10Jul 10, 2024Updated last year
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆125Apr 16, 2025Updated 10 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Apr 2, 2025Updated 10 months ago
- Transcription Factor Enrichment Analysis☆36Dec 8, 2025Updated 2 months ago
- Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer☆82Dec 16, 2023Updated 2 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆81Feb 17, 2025Updated 11 months ago
- ☆54Aug 6, 2025Updated 6 months ago
- ☆33Jan 23, 2025Updated last year
- scDrug: From scRNA-seq to Drug Repositioning☆37May 8, 2023Updated 2 years ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆38Dec 17, 2025Updated last month
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆50Aug 11, 2025Updated 6 months ago
- XML to a python dictionary☆11Sep 13, 2020Updated 5 years ago