Alternatives and similar repositories for psix

Users that are interested in psix are comparing it to the libraries listed below

• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆43Updated 3 months ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆35Updated 4 years ago
• songlab-cal / scquint
  ☆18Updated last year
• ans4013 / ScisorWiz
  ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data
  ☆20Updated last year
• mehdiborji / nanoranger
  simplified cellranger for long-read data
  ☆20Updated 5 months ago
• eudoraleer / scasa
  SCASA: Single cell transcript quantification tool
  ☆22Updated 2 years ago
• YeoLab / rbp-maps
  splicing and feature maps for RBPs
  ☆25Updated 3 years ago
• hemberg-lab / MicroExonator
  Snakemake pipeline for microexon discovery and quantification
  ☆20Updated last year
• ConesaLab / acorde
  Isoform co-usage networks from single-cell RNA-seq data
  ☆16Updated last year
• aertslab / PUMATAC
  Pipeline for Universal Mapping of ATAC-seq
  ☆25Updated 4 months ago
• bernardo-de-almeida / motif-clustering
  Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy
  ☆29Updated 3 years ago
• joachimwolff / scHiCExplorer
  Single-cell Hi-C data analysis toolbox
  ☆27Updated 4 years ago
• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆18Updated last month
• smlmbrt / SimilarityRegression
  Predicting TF sequence-specificity similarity with weighted alignments
  ☆13Updated 6 years ago
• HuMingLab / SnapHiC
  SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data
  ☆42Updated 2 years ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆41Updated 3 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• icbi-lab / NeoFuse
  NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
  ☆20Updated 3 years ago
• 10XGenomics / cellranger-atac
  ☆23Updated 5 years ago
• jacobhepkema / scover
  scover
  ☆24Updated 2 years ago
• PoolLab / ReferenceEnhancer
  ☆20Updated 2 years ago
• SchulzLab / STARE
  TF analysis from epigenetic and Hi-C data
  ☆19Updated 10 months ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated 2 years ago
• ijuric / MAPS
  ☆19Updated 2 years ago
• sims-lab / CapCruncher
  Analysis tool for NG-Capture-C, Tri-C and Tiled-C data
  ☆10Updated 3 months ago
• XueyiDong / LongReadBenchmark
  Benchmarking long-read RNA-seq analysis tools
  ☆27Updated 11 months ago
• dejunlin / hicrep
  Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support
  ☆41Updated 2 years ago
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆17Updated 6 years ago
• Genentech / Isosceles
  The Isoforms from Single-Cell; Long-read Expression Suite
  ☆37Updated last year
• qqwang-berkeley / JUM
  A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns
  ☆30Updated 2 years ago