lareaulab / psixLinks
☆16Updated last year
Alternatives and similar repositories for psix
Users that are interested in psix are comparing it to the libraries listed below
Sorting:
- ☆18Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆41Updated 2 months ago
- SCASA: Single cell transcript quantification tool☆22Updated 2 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- splicing and feature maps for RBPs☆25Updated 3 years ago
- scover☆24Updated 2 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆20Updated 3 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 11 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Updated 4 years ago
- ☆12Updated 5 years ago
- simplified cellranger for long-read data☆19Updated 4 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 6 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Updated 2 years ago
- ☆19Updated 2 years ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Updated 3 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 9 months ago
- A toolkit for analyzing architectural stripes☆20Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 3 months ago
- RAGE-seq scripts☆18Updated 4 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Updated 4 years ago
- ☆23Updated last year
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago