chess-genome / chess
Comprehensive Human Expressed SequenceS
☆16Updated 6 months ago
Alternatives and similar repositories for chess:
Users that are interested in chess are comparing it to the libraries listed below
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Toolkit for benchmarking fusion transcript predictions☆18Updated 5 months ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 3 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- RNA-Seq pipeline☆34Updated 9 years ago
- iread☆23Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 5 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- Useful tools for working with Salmon output☆36Updated 4 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- TSIS: an R package to infer time-series isoform switch of alternative splicing☆3Updated last year
- ☆25Updated last month
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆34Updated 6 months ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆27Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆28Updated 5 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆11Updated last year
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated last year
- Workflow for Sequenza, cellularity and ploidy☆19Updated 7 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated 3 months ago
- ☆18Updated 6 months ago
- ☆15Updated 7 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated 11 months ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 6 years ago
- ☆21Updated 8 months ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago