greenelab / ccc
☆23Updated last month
Alternatives and similar repositories for ccc:
Users that are interested in ccc are comparing it to the libraries listed below
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆26Updated 3 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆34Updated this week
- ☆34Updated 9 months ago
- scover☆23Updated last year
- ☆28Updated 6 years ago
- ☆29Updated last year
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆37Updated last year
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- Exon-Intron Split Analysis (EISA) in R☆16Updated last month
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- simplified cellranger for long-read data☆18Updated 5 months ago
- ☆42Updated 4 months ago
- Information-based dimensionality reduction☆29Updated 2 months ago
- post-clustering differential expression test☆35Updated 5 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- ☆20Updated last year
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 5 years ago
- A python package for chromVAR☆27Updated last year
- ☆45Updated 7 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆19Updated 3 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆32Updated 3 years ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated 2 weeks ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- kallisto index tag extractor☆20Updated 5 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 10 months ago