greenelab / ccc
☆17Updated last month
Related projects: ⓘ
- Exon-Intron Split Analysis (EISA) in R☆15Updated last month
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆27Updated last month
- ☆17Updated 4 months ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated last year
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- epigenome analysis to rank transcription factors☆13Updated 4 years ago
- Mean Alterations Using Discrete Expression☆13Updated 5 months ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆24Updated 3 years ago
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆21Updated 7 months ago
- ☆19Updated 7 years ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 3 years ago
- A clusterability measure for scRNA-seq data.☆16Updated 2 years ago
- High-definition modeling of chromatin + transcriptomics data☆17Updated last month
- Normalization for single cell RNA-seq data☆9Updated 2 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 4 years ago
- kallisto index tag extractor☆20Updated 5 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆41Updated last year
- Code associated with MIX-seq manuscript☆14Updated 4 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated last year
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- scover☆22Updated 10 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated last year
- ☆15Updated 3 months ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 3 years ago
- Snakemake pipeline for microexon discovery and quantification☆19Updated 3 months ago
- Pipeline for Universal Mapping of ATAC-seq☆20Updated 4 months ago
- Refining the impact of genetic evidence on clinical success☆20Updated 2 months ago
- 🐶 hlabud: HLA genotype analysis in R☆16Updated 3 months ago
- Differential ATAC-seq toolkit☆27Updated 9 months ago