Alternatives and similar repositories for terminus

Users that are interested in terminus are comparing it to the libraries listed below

• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆35Updated 4 months ago
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆111Updated 2 months ago
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆12Updated last year
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆29Updated 6 months ago
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆37Updated 8 months ago
• google / best
  Bam Error Stats Tool (best): analysis of error types in aligned reads.
  ☆138Updated 11 months ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆139Updated last month
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆65Updated last year
• brentp / vcfexpress
  expressions on VCFs
  ☆89Updated 9 months ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆34Updated 7 months ago
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆52Updated last year
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated 3 months ago
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆42Updated 2 months ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆55Updated 5 months ago
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆103Updated last month
• lh3 / pre-pe
  Preprocessing paired-end reads produced with experiment-specific protocols
  ☆32Updated 7 years ago
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆95Updated last month
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆81Updated 10 months ago
• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆143Updated last month
• mbhall88 / ssubmit
  Submit slurm sbatch jobs without a script
  ☆73Updated 5 months ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆66Updated last month
• 10XGenomics / scan-rs
  Single-cell analysis methods in Rust
  ☆28Updated 2 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆93Updated 3 months ago
• fulcrumgenomics / pybwa
  Python language bindings for bwa
  ☆12Updated last month
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆119Updated 2 months ago
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆72Updated last year
• 38 / d4-format
  The D4 Quantitative Data Format
  ☆169Updated last month
• alevar / ORFanage
  Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…
  ☆42Updated 2 weeks ago