☆57Aug 11, 2022Updated 3 years ago
Alternatives and similar repositories for terminus
Users that are interested in terminus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Dec 26, 2025Updated 6 months ago
- Analyzing RNA-Seq with approximate likelihood☆26Dec 13, 2020Updated 5 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Mapping sequencing data to De Bruijn graphs, fast☆37Jul 10, 2026Updated last week
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆95Updated this week
- An optimal space run-length Burrows-Wheeler transform full-text index☆27Oct 28, 2021Updated 4 years ago
- ☆24Apr 2, 2021Updated 5 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆112Jun 19, 2026Updated last month
- 🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transc…☆213Jul 10, 2026Updated last week
- ☆15May 22, 2026Updated last month
- Bidirectional WFA (Paper)☆49May 20, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆198Mar 8, 2022Updated 4 years ago
- Fast interval intersection library☆45Jul 14, 2026Updated last week
- GBWT-based handle graph☆35Jun 17, 2026Updated last month
- Efficient querying of biological databases☆44Oct 27, 2025Updated 8 months ago
- Transcript quantification import with automatic metadata detection☆72Jul 8, 2026Updated last week
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated 2 years ago
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated 2 years ago
- Grep for FASTQ files☆104Jul 9, 2026Updated last week
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Simple and transparent support for compressed files.☆81Jul 1, 2026Updated 2 weeks ago
- Rust bindings to minimap2 library☆113May 3, 2026Updated 2 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆144Aug 24, 2025Updated 10 months ago
- ☆16Jun 29, 2026Updated 3 weeks ago
- ☆17Jan 6, 2025Updated last year
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 4 years ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆13Apr 16, 2019Updated 7 years ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- Practical Dynamic de Bruijn Graphs☆18Oct 1, 2020Updated 5 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Apr 1, 2019Updated 7 years ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 5 years ago
- Fast in-silico normalization algorithm for NGS data☆24Nov 1, 2021Updated 4 years ago
- A Python wrapper for the bbhash library for Minimal Perfect Hashing☆19Oct 26, 2025Updated 8 months ago