Alternatives and similar repositories for terminus

Users that are interested in terminus are comparing it to the libraries listed below

• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated this week
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆101Updated 3 months ago
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆12Updated 9 months ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆28Updated 3 weeks ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆65Updated last year
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆28Updated 2 months ago
• mbhall88 / ssubmit
  Submit slurm sbatch jobs without a script
  ☆70Updated last month
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆64Updated 3 months ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆78Updated 6 months ago
• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆137Updated last month
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆98Updated 5 months ago
• brentp / vcfexpress
  expressions on VCFs
  ☆85Updated 4 months ago
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆51Updated last year
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆36Updated 4 months ago
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated 2 months ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated 3 months ago
• google / best
  Bam Error Stats Tool (best): analysis of error types in aligned reads.
  ☆136Updated 7 months ago
• kcleal / superintervals
  Fast interval intersection library
  ☆43Updated 3 weeks ago
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆42Updated last month
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆112Updated last month
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆90Updated 3 months ago
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆91Updated 2 weeks ago
• COMBINE-lab / oarfish
  long read RNA-seq quantification
  ☆88Updated 2 weeks ago
• aakechin / cutPrimers
  curPrimers is a tool for trimming primer sequences from amplicon based NGS reads
  ☆16Updated 3 months ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆31Updated 8 months ago
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆36Updated 2 months ago
• ncbi / BAMscale
  BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …
  ☆72Updated 9 months ago
• OceanGenomics / mudskipper
  A tool for projecting genomic alignments to transcriptomic coordinates
  ☆36Updated last year