skandlab / SMuRFLinks
☆22Updated 11 months ago
Alternatives and similar repositories for SMuRF
Users that are interested in SMuRF are comparing it to the libraries listed below
Sorting:
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 5 years ago
- ☆14Updated 8 months ago
- Filter and prioritize fusion calls☆20Updated last week
- Workflow for Sequenza, cellularity and ploidy☆26Updated 5 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆42Updated 5 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- ☆23Updated 6 months ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- DriverPower☆26Updated last year
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- Comprehensive Human Expressed SequenceS☆19Updated 6 months ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- ☆18Updated 4 years ago
- ☆24Updated last year
- Integrated workflow for SV calling from single-cell Strand-seq data☆25Updated 2 weeks ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated 3 weeks ago
- ☆11Updated 4 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 11 months ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated 2 years ago